Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00444 ATGAACTACCGTCGCAGCCCCGGTGGCTTCCGCACTGGCGGCGCTGCTCCTCACCACCGCTCCTTTGATAGTCCCCCGCGTCGGTCTCCTGGCAGGGGCGGAGGCTTCCGGTCACCCCCTGCCGGCGAAGGGTTCAGGCCAATGGGTGGTGAGGGTCCTCCTGGAGGAGAATTTGGATTCAACAGTCATCAGCCACCGCCACTGTCTGGTCAGAAGCGAGGGTTTCCTTTCTCTGGACGCGGACCTTCACCCGACCGCTTTGATGGTGGAAATTTTGCCAAACTTTTTGTTGGGTCTGTTCCCCGGACAGCCACTGAAGAAGATATTCGCCCTTTGTTTGAGGAACATGGGAACGTGATTGAGGTTGCCCTGATCAAAGATAGAAAGACAGGACATCACCAAGGTTGTTGTTTCATAAAATATGCTACCTCAGAAGAAGCTGATCAGGCAATTAGAGCTTTGCATAATCAACATACTCTTCCTGGTGGTGTTGGTCCCATCCAAGTCCGGTATGCTGATGGTGAACGGGAACGCCTTGGTGCTGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTTCAGTTAAGGAAGTCGAGGAAATTTTCTCAAAATATGGGCGGGTTGAAGATGTTTATCTTATGCGTGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTTAAATACTCGCACAGAGATATGGCACTGGCAGCTATTAATGCACTTAATGGAATCTACACAATGAGAGATTGTGATCAACCATTGATTGTCCGATTTGCTGATCCAAAGAGACCTCGTCAAGCAGATTCCAGGGGTTCTGCATTTGGGGGTCCAGGGTTTGGTCCAAGATTTGATGCACCAGGCACTAGACTTCCATCCAATATTTCTGATCCTATGGGTGATCGTATGCCTCCCCCTAATGCCTGGCGTCCAATGCATCCACCAAATATGGGGCCATCCTCTAATTCTGGTTTTCATGGCATGGGCCCTCCGTTGCTTCCAAGATCTGGTGACATGGCAGCGCCTATAAATGGAGGTGGCCCTATGACTGGCATGGGAGTCCCCATAGATGGTCGTTTTCAAGTTCCGTCATCAATGCCACAACAGAATTTCAACCAGCCTCTACCGCAAATTCCACCAGTCAATCAACAAATATCACCATTGAAGAAACCTATTCAATCATCTCAGGAGTTACCACATTCCCACCAGTTGTATCCTCAAGCCCGGATGCCCTACCCACAAACATCAACACTTCCATCTCTTAGGCAGCATGGTCAGCCTCAACTTCCTCTCTCTGGTAGTCCTCTTCCATCACAGCAGGGACTTGGCATAAGTGGACAGTTTCCAACTTCTCAGCCCCAAACTCAGCAGAGTGCTATGTCTGCTACAATTCCTCAGGCCCCTTTTGATACCGGTATGCAATCTAATACACCATTGACTACACCAAATCAGCAGCAAGTTCCTCCCTCTATGCAGCAGCAATCACTTCAACCTCTTCAGCAATCCCCTTCTCAGTTAGCTCAGATGTTGTCACAACAGACACAGAATTTACAAGCGAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAGATGATGCAACCATTACCATCTAGTCATGCAATAACATTGCAGCAAAATTCAGAAACTACTAAAAAGCAGCCTCAATGGGCTGGATCTGTAGCACAGGCGGTGGCCAGCACTCATGTAGCTGCACCTGCTGCAGATGTGCCTCCATCCACATCTGCTACTTCTGCTGTAGCAGCAATAAGCCAGAACACGACTCCTGCAAAATGTAACTGGACAGAACATATATCTCCTGAGGGCTTCAAGTACTACTATAATAGTGTCACTGGGGAAAGTCGGTGGGAGAAACCTGAGGAGCTAATATTATCTGAACAACAAAAGCAACAACAGAGGCCATCTGTTCAGCAGTCTCAAACTCAGTCACAGCCTTCAATGCTACCCACCCAGCAAGTAACACAAATCCAACACGTTCAGCCCCAAAGTCATCTCCAAGGACAGGTTCTCCACCAGCAACAAATACAGCAGCCTTCTTTGTCTTCTTCATTCCAGGCATATGGAGTTACAGGTCATCAAAATGTTCAGGAAGTTGGTTATAAACAGTTACAGGCATCGGTTATTTCTGCTGGTGATCCTGGACGCTACTCACAGGGTATTAATACCACACAAGAGTTAATGTGGAAAAACAAGCCTGCAGGTTCTAGTCCTTGCACCCATTCTTTTACCCTGAACACATGCAAACACACACAAAGTACATGA 2304 0.4779 MNYRRSPGGFRTGGAAPHHRSFDSPPRRSPGRGGGFRSPPAGEGFRPMGGEGPPGGEFGFNSHQPPPLSGQKRGFPFSGRGPSPDRFDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDRKTGHHQGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRDCDQPLIVRFADPKRPRQADSRGSAFGGPGFGPRFDAPGTRLPSNISDPMGDRMPPPNAWRPMHPPNMGPSSNSGFHGMGPPLLPRSGDMAAPINGGGPMTGMGVPIDGRFQVPSSMPQQNFNQPLPQIPPVNQQISPLKKPIQSSQELPHSHQLYPQARMPYPQTSTLPSLRQHGQPQLPLSGSPLPSQQGLGISGQFPTSQPQTQQSAMSATIPQAPFDTGMQSNTPLTTPNQQQVPPSMQQQSLQPLQQSPSQLAQMLSQQTQNLQASFHSSQQAFSQLQQQLQMMQPLPSSHAITLQQNSETTKKQPQWAGSVAQAVASTHVAAPAADVPPSTSATSAVAAISQNTTPAKCNWTEHISPEGFKYYYNSVTGESRWEKPEELILSEQQKQQQRPSVQQSQTQSQPSMLPTQQVTQIQHVQPQSHLQGQVLHQQQIQQPSLSSSFQAYGVTGHQNVQEVGYKQLQASVISAGDPGRYSQGINTTQELMWKNKPAGSSPCTHSFTLNTCKHTQST. 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00444 767 SMART rrm1_1 94 170 IPR000504 GO:0003723
Seca11g00444 767 SMART rrm1_1 185 260 IPR000504 GO:0003723
Seca11g00444 767 ProSiteProfiles WW/rsp5/WWP domain profile. 602 635 IPR001202 GO:0005515
Seca11g00444 767 Gene3D - 181 272 IPR012677 -
Seca11g00444 767 FunFam flowering time control protein FCA isoform X2 87 179 - -
Seca11g00444 767 Pfam WW domain 607 633 IPR001202 GO:0005515
Seca11g00444 767 MobiDBLite consensus disorder prediction 362 495 - -
Seca11g00444 767 SUPERFAMILY RNA-binding domain, RBD 73 178 IPR035979 GO:0003676
Seca11g00444 767 MobiDBLite consensus disorder prediction 265 301 - -
Seca11g00444 767 SMART ww_5 603 635 IPR001202 GO:0005515
Seca11g00444 767 SUPERFAMILY RNA-binding domain, RBD 184 285 IPR035979 GO:0003676
Seca11g00444 767 MobiDBLite consensus disorder prediction 1 88 - -
Seca11g00444 767 CDD WW 605 635 IPR001202 GO:0005515
Seca11g00444 767 Gene3D - 89 180 IPR012677 -
Seca11g00444 767 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 174 IPR000504 GO:0003723
Seca11g00444 767 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 249 IPR000504 GO:0003723
Seca11g00444 767 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 158 IPR000504 GO:0003723
Seca11g00444 767 MobiDBLite consensus disorder prediction 639 673 - -
Seca11g00444 767 FunFam Flowering time control protein FCA 180 270 - -
Seca11g00444 767 PANTHER RNA BINDING PROTEIN 64 541 - -
Seca11g00444 767 MobiDBLite consensus disorder prediction 364 495 - -
Seca11g00444 767 ProSitePatterns WW/rsp5/WWP domain signature. 608 633 IPR001202 GO:0005515
Seca11g00444 767 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 264 IPR000504 GO:0003723
Seca11g00444 767 SUPERFAMILY WW domain 607 638 IPR036020 GO:0005515
Seca11g00444 767 Gene3D - 601 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00444 Seca-Chr11 4362794 4374965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00444 95 299 Eukaryotic Initiation Factors Gene Family AT1G71770 23.902 2.58e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00444 - - gmx:100798390 1035.79