Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00442 ATGGAGGAGAACAGAGAGAAGGCATTCACTACCATGGCGAATTCTCTCTCATTTCCGGATGAGATTCTGAACATGACCATCAACACCAAAAGCAGCTTCGGTTTTCCTTTCTCATCATCACCGAGCATCTTTGACATGATGGAACAACCACCACCACCAGATCAAAAAACTCTTAGCTTCAAGGAATTGCTCTGTACCAAGGATTTCAATTCAAACGAATCTATATTCGATTTGTTCCCCACCATCACCACACAGGATGCTACCAACACCAACACCGTTCTCACATCCACCAAAATCAATCAGCCTCTCACTTCACCTCCAGCAAGCTCCTACGTCGTGGATTGCTCTGAGGTGCTCAACAGCACTCCAGCCACACCGAACTCCTTCTCCATTTCGTCATCGCCGAACGAAGCTGCCGTCGGAGGAAACAAATCACCTGAAGCAGAGGTCAACGACGGAGGAAAACATGCAGATGCAGAGAAAGGAGACGAAAATCAAATTCAAGATGAGATCACCAACAAACAAAATAGGGTGAAAGAAAAGAAGATGAAGAGCCCGACGAAGAAGGGTAGATTTGCTTTCAAGACAAAGAGCGAAGTGGATCATTTAGACGATGGGTATAGGTGGCGCAAATACGGCCAGAAAGCTGTGAAAAATAGCCCCTATCCAAGGAGTTACTACCGTTGCACCGCTGATGGTTGTAGCGTGAAGAAGCGAGTGGAGCGATCCTATGAGGACCCGTCCACCGTGGTCACCACTTATGATGGCCAACACACCCACCCCTGCCCGGTTATGTCCAACCATCGTTCTAGCTTCGGGTACCGAGCCTATGCCTCGGGTAGGGGCAATGCTGCTGGTGCTGGTGCTCATTCTGTTAGATTCAGTTCTTCAACTCGCCTGGTGCTGGAGCCACAGCGCCAGCAATTTCAATATCATGGCAATGCGGCGTCGTTTAGCAGCAGCTTCGTTCAGAATCAAAGCCAAGGTGGTGGTTTTGTGCCACCTACATGGATGAGTAATGCTCCTCGTCAGGGTTTGTTACCAGCTGGCAATGGCCTTCTTCAGGACATTATTATGTCAGCCCAGATGCAACGAGGACAAGGAATTAACTGA 1113 0.487 MEENREKAFTTMANSLSFPDEILNMTINTKSSFGFPFSSSPSIFDMMEQPPPPDQKTLSFKELLCTKDFNSNESIFDLFPTITTQDATNTNTVLTSTKINQPLTSPPASSYVVDCSEVLNSTPATPNSFSISSSPNEAAVGGNKSPEAEVNDGGKHADAEKGDENQIQDEITNKQNRVKEKKMKSPTKKGRFAFKTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTADGCSVKKRVERSYEDPSTVVTTYDGQHTHPCPVMSNHRSSFGYRAYASGRGNAAGAGAHSVRFSSSTRLVLEPQRQQFQYHGNAASFSSSFVQNQSQGGGFVPPTWMSNAPRQGLLPAGNGLLQDIIMSAQMQRGQGIN. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00442 370 MobiDBLite consensus disorder prediction 123 140 - -
Seca11g00442 370 SUPERFAMILY WRKY DNA-binding domain 196 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca11g00442 370 Coils Coil 164 184 - -
Seca11g00442 370 SMART WRKY_cls 203 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g00442 370 MobiDBLite consensus disorder prediction 123 189 - -
Seca11g00442 370 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 121 303 IPR044810 GO:0003700
Seca11g00442 370 ProSiteProfiles WRKY domain profile. 198 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g00442 370 Pfam WRKY DNA -binding domain 204 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g00442 370 Gene3D WRKY domain 188 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca11g00442 370 MobiDBLite consensus disorder prediction 149 180 - -
Seca11g00442 370 FunFam WRKY transcription factor 57 189 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00442 Seca-Chr11 4344988 4346701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00442 23 305 WRKY Transcription Factor Family AT2G47260 40.278 6.27e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca11g00442 WRKY 5.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00442 - - gmx:100788697 238.81