Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00439 ATGCAGGATGAATATGATGATGGTGGGTACGAGATGTACCATGTTCAAGGTACACTCAGAGAATGGGTTACAAGAGATGAAGTGCGCCGATTCATAGCCCGGAAATTCAAGGATTTCTTACTCACATATGTCAATCCAAAAAATGAACATGGTCAATTTGAATATGTGCGCCTGATAAATGAGATGGTGTCAGCTAACAAGTGTAGTTTGGAGATTGATTACAAACAATTTATCTATGTCCATCCCAACATTGCCATATGGCTGGCTGATGCACCTCAGTCTGTTTTAGAAGTAATGGAAGACGTTGCCAAAAGTGTTGTCTTTCAACTGCATCCAAATTACAAAAATATACATCAAAAGATTTATGTTCGCATAACCAACTTACCAGTATATGATCAGATTCGAAATATTAGGCAGATCCACTTAAATACAATGATCCGAATTGGGGGAGTAGTAACCAGGCGCTCTGGAGTTTTCCCCCAATTGCAACAGGTGAAGTATGACTGCAACAAATGTGGGGCCATTTTGGGACCTTTTTTTCAGAATTCCTATTCAGAGGTTAAAGTTGGATCCTGTCCCGAGTGTCAGTCAAAAGGACCATTCACTGTCAATATTGAGCAGACAATTTACAGGAATTTTCAAAAGCTTACTCTCCAAGAGAGCCCAGGAATAGTTCCTGCTGGTCGACTTCCAAGATACAAGGAAGTGATACTACTGAATGATCTGATTGACTGTGCTCGACCCGGGGAAGAGATTGAGGTCACAGGTATTTATACAAATAACTTTGACTTATCCTTAAACACAAAGAATGGATTTCCAGTGTTTGCCACTGTTGTTGAGGCAAATCATGTTACGAAGAAGCAAGATCTGTTCTCTTCCTACAAACTTACACAGGAAGACAAAGAAGAGATTGAAAATTTGGGCAAAGACCCCCGAATCGGAGAAAGGATTATTAAGTCTATTGCTCCATCAATCTATGGTCATGAGGACATAAAAACTGCAATAGCGTTAGCTATGTTCGGAGGTCAAGAGAAAAATGTTGAAGGAAAGCATCGACTGCGAGGAGACATAAATGTTCTTCTTCTCGGTGATCCAGGAACAGCAAAGTCTCAATTTCTCAAGTATGTGGAAAAAACTGGGCAGAGAGCTGTATACACTACTGGCAAAGGGGCTTCTGCTGTGGGTCTCACAGCTGCAGTTCACAAGGACCCAGTCACTAGGGAGTGGACCCTTGAGGGTGGAGCCCTTGTTCTAGCTGACAAAGGAATTTGTCTCATTGATGAGTTTGACAAGATGAATGATCAGGATAGGGTAAGTATCCATGAAGCCATGGAACAGCAGAGCATAAGCATATCAAAAGCAGGAATTGTCACATCTCTTCAGGCACGCTGTTCTGTCATTGCTGCTGCAAATCCTATCGGAGGAAGATATGATTCCTCAAAAACTTTTTCCTCAAATGTTGAATTGACAGACCCTATTATATCTCGTTTTGACATCCTCTGCGTTGTGAAGGTTATGTTTAAATTCATTGCTTCTTCAATGAACCCTTCATTTATTCATATTTATTGA 1569 0.4085 MQDEYDDGGYEMYHVQGTLREWVTRDEVRRFIARKFKDFLLTYVNPKNEHGQFEYVRLINEMVSANKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEDVAKSVVFQLHPNYKNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANHVTKKQDLFSSYKLTQEDKEEIENLGKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSSNVELTDPIISRFDILCVVKVMFKFIASSMNPSFIHIY. 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00439 522 Pfam MCM OB domain 133 260 IPR033762 -
Seca11g00439 522 SMART mcm 130 519 IPR031327 GO:0003677|GO:0005524|GO:0032508
Seca11g00439 522 Gene3D - 161 211 - -
Seca11g00439 522 Pfam MCM N-terminal domain 34 127 IPR027925 -
Seca11g00439 522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 323 506 IPR027417 -
Seca11g00439 522 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 166 178 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Seca11g00439 522 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 262 273 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Seca11g00439 522 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 143 160 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Seca11g00439 522 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 201 215 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Seca11g00439 522 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 277 288 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Seca11g00439 522 Gene3D - 26 130 - -
Seca11g00439 522 FunFam DNA helicase 161 211 - -
Seca11g00439 522 ProSitePatterns MCM family signature. 422 430 IPR018525 GO:0003677|GO:0005524|GO:0006260
Seca11g00439 522 Gene3D - 293 508 IPR027417 -
Seca11g00439 522 Pfam MCM P-loop domain 301 504 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g00439 522 PRINTS Mini-chromosome maintenance (MCM) protein family signature 354 369 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g00439 522 PRINTS Mini-chromosome maintenance (MCM) protein family signature 493 501 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g00439 522 PRINTS Mini-chromosome maintenance (MCM) protein family signature 414 428 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g00439 522 PRINTS Mini-chromosome maintenance (MCM) protein family signature 466 478 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g00439 522 PRINTS Mini-chromosome maintenance (MCM) protein family signature 442 455 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g00439 522 Gene3D - 134 259 IPR012340 -
Seca11g00439 522 ProSiteProfiles MCM family domain profile. 313 503 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g00439 522 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 19 504 IPR031327 GO:0003677|GO:0005524|GO:0032508
Seca11g00439 522 SUPERFAMILY Nucleic acid-binding proteins 35 282 IPR012340 -
Seca11g00439 522 FunFam DNA helicase 26 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00439 Seca-Chr11 4283361 4288969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00439 12 519 Core DNA Replication Machinery Family AT1G44900 88.976 0.0 958
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00439 K02540 - qsu:111999780 979.163