Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00430 ATGTCGAAGCTTAAGCTTTCCGATGAAAGAAGGTCTCACTCGGTGTCTCCACAACGTTCCAGATTGGGTGATGGATCAGCTGCGTGGAAGAAAGGCACTTGTTCCTTCAAACAATCCTCGCCTCTTCAGAGGGAGAGTCGTGGTGAACCTCAAAATGAAGCAAAAGAAGGCCAGTATCTCAATATTTTGCAGTCAATGGGACAATCTATTCATATATTGGATCTTAACTATCGTATAATATACTGGAACCGTAGTGCTGAAAATCTATATGGTTATGCAGCAGAGGAAGCTCTAGGACAGGATGGGATTGAGCTGCTTGTAGACCCTAGAGATTTGACCTTAGCCTATGATACAGTGAACCGTGTCATGATGGGAGAGAGATGGACTGGACAATTCCTAGTCAAGAATAAGATGGGAGAGAATTTTTTAGCTGTAGCAACTAATACACCTTTTTATGATGATGATGGAAGCTTAGTCGGGGTTATTTGTGTCTCAAGTGATTCACGGCCTTTTCTTGAAATGAGAGTTCCATTCTCAAGTGTAAAGAATGCTGAATCGGATTCAGGTTCCACCCGTCCTAGAAGTAGCATTACAAATAAACTTGGCCTTGACTCTCAACAGCCACTTCAAGCTGCCCTGGCATCTAAACTTTCAAATTTGGCATCAAAGGTGAGTAATAAAGTTAAGTCAAGAATCTAG 699 0.4206 MSKLKLSDERRSHSVSPQRSRLGDGSAAWKKGTCSFKQSSPLQRESRGEPQNEAKEGQYLNILQSMGQSIHILDLNYRIIYWNRSAENLYGYAAEEALGQDGIELLVDPRDLTLAYDTVNRVMMGERWTGQFLVKNKMGENFLAVATNTPFYDDDGSLVGVICVSSDSRPFLEMRVPFSSVKNAESDSGSTRPRSSITNKLGLDSQQPLQAALASKLSNLASKVSNKVKSRI. 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00430 232 MobiDBLite consensus disorder prediction 1 53 - -
Seca11g00430 232 CDD PAS 66 167 IPR000014 -
Seca11g00430 232 MobiDBLite consensus disorder prediction 182 201 - -
Seca11g00430 232 Pfam PAS fold 58 165 IPR013767 GO:0006355
Seca11g00430 232 MobiDBLite consensus disorder prediction 1 17 - -
Seca11g00430 232 NCBIfam PAS domain S-box protein 54 167 IPR000014 -
Seca11g00430 232 SUPERFAMILY PYP-like sensor domain (PAS domain) 61 164 IPR035965 -
Seca11g00430 232 SMART pas_2 57 124 IPR000014 -
Seca11g00430 232 MobiDBLite consensus disorder prediction 32 47 - -
Seca11g00430 232 ProSiteProfiles PAS repeat profile. 55 126 IPR000014 -
Seca11g00430 232 Gene3D PAS domain 67 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00430 Seca-Chr11 4150521 4151836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00430 1 232 MAP Kinase Kinase Kinase AT3G06620 45.660 1.10e-72 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00430 - - gmx:100800867 351.288