Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00417 ATGGCGTTTTGGTGGCCATTGCTCGTTTTAGCTTTCGCTTATGGTATCTGTAGATTCCTTCTCATGCTCATTCCTCCCAAGGTTCCTTCCATCGACGTTGACACTTCCGATGTGTTGGACGATGGAAACCAAGCGCAGGAGAACAGCTTCATATATGTTCCTCCGAGGGGAACATCGCAGCAATCAGGGAAGATAGTTCAGTGCTATGAACCTGCAACTATGAAATATTTGGGATATGTTCCTGCGTTGACACATGATGAGGTCAAGGATCGAGTGTCAAAAGTAAGAAAGGCACAAAAAATGTGGGCAAAGTCCAGCTTCAAGCAAAGACGCTTGTTTCTGCGTATACTTTTGAAGTATATAATCAAACATCAAGCACTTATATGCGAAATATCTTCGCGTGATACTGGAAAGACAATGGTAGATGCCTCTTTAGGAGAAATAATGACAACATGTGAGAAGATCAATTGGCTACTGTCAGAGGGCGAGCAGTGGCTAAGGCCTGAATACCGGTCTTCTGGAAGATCAATGCTTCATAAGAGAGCCAAAGTGGAATTTCACCCCCTTGGTGTTATCGGAGCCATTGTTTCATGGAATTATCCTTTCCACAATATTTTTAATCCTATGCTGGCAGCAGTTTTTTCTGGAAACGGCATTGTGATTAAGATATCGGAACATGCAAGTTGGTCTGGATGCTTTTACTTCCGGATCATCCAGTCAGCCCTTGCTGCCATAGGAGCTCCAGAGGACCTGGTTGAGGTGATAACAGGGTTTGCTGAAACAGGAGAAGCATTGGTATCTTCTGTAGATAAAGTCATATTTGTTGGATCACCTGGTGTTGGTAAAATGATAATGAGAAATGCTGCTGAGACCCTTATACCAGTTACACTAGAGCTTGGGGGCAAAGATGCATTTATTGTTTGCGAAGACGTAGATGTGGACCATGTTGCACAAATTGCTGTCAGAGCTGCTCTCCAGTCTAGTGGACAGAACTGTGCTGGGGCTGAGCGATTTTATGTCCACAGGGAAATTTATTCTTCTTTTGTCAGTAAAGTTACCAAAATCATAAAGTCTGTTACAGCTGGCCCACCACTTGTTGGCAAGTATGATATGGGAGCTTTATGCATGCATGAGCATTCTGAAAAGCTTGAAGGCCTTGTAAATGATGCTTTAGACAAAGGAGCTGAAATTGTTGCACGTGGGAGTTTTGGACATATAGGTGAAGATGCAGTTGATCAGTATTTCCCCCCTACTGTGATTGTGAATGTGAACCACTCCATGAGATTGATGCAAGACGAGGCATTTGGACCAATCATCCCAATAATGAAATTTAGCTCTGATGAGGAGGCTGTCAAGCTTGCAAATGACTCAAAATATGGGCTTGGCTGTGCTGTTTTCTCAGGCAGTCAGAGCCGTGCGAGAGATATAGCTTCACAGATACATTCTGGGGTAGCTGCAGTTAATGATTTTGCAGCAACGTACATGTGTCAGTCCCTACCATTTGGGGGGGTGAAACATAGTGGATTTGGACGATTCGGTGGTGTAGAAGGTTTGCGAGCTTGCTGTCTTGTTAAAGCAGTTGTTGAAGATCGATGGTGGCCATTTGTCAAAACCAAGATACCTAAGCCTATTCAGTATCCTGTTGCAGAGAATGGGTTTGAATTTCAGGAGTCACTTGTTGAAGCACTTTATGGGCTCAGCATATGGGACCGTTTGCGAGCATTAGTAAACGTTTTAAAAATGCTTACCGAGCAGAATCCTGCTGGTAGCAGCAATAAGAGAAGAAATGACTAA 1794 0.4359 MAFWWPLLVLAFAYGICRFLLMLIPPKVPSIDVDTSDVLDDGNQAQENSFIYVPPRGTSQQSGKIVQCYEPATMKYLGYVPALTHDEVKDRVSKVRKAQKMWAKSSFKQRRLFLRILLKYIIKHQALICEISSRDTGKTMVDASLGEIMTTCEKINWLLSEGEQWLRPEYRSSGRSMLHKRAKVEFHPLGVIGAIVSWNYPFHNIFNPMLAAVFSGNGIVIKISEHASWSGCFYFRIIQSALAAIGAPEDLVEVITGFAETGEALVSSVDKVIFVGSPGVGKMIMRNAAETLIPVTLELGGKDAFIVCEDVDVDHVAQIAVRAALQSSGQNCAGAERFYVHREIYSSFVSKVTKIIKSVTAGPPLVGKYDMGALCMHEHSEKLEGLVNDALDKGAEIVARGSFGHIGEDAVDQYFPPTVIVNVNHSMRLMQDEAFGPIIPIMKFSSDEEAVKLANDSKYGLGCAVFSGSQSRARDIASQIHSGVAAVNDFAATYMCQSLPFGGVKHSGFGRFGGVEGLRACCLVKAVVEDRWWPFVKTKIPKPIQYPVAENGFEFQESLVEALYGLSIWDRLRALVNVLKMLTEQNPAGSSNKRRND. 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00417 597 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 325 336 IPR016160 GO:0016491
Seca11g00417 597 FunFam Aldehyde dehydrogenase A 301 495 - -
Seca11g00417 597 SUPERFAMILY ALDH-like 60 529 IPR016161 GO:0016491
Seca11g00417 597 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 66 525 IPR016162 GO:0016491
Seca11g00417 597 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 500 IPR016163 GO:0016620
Seca11g00417 597 CDD ALDH_F15-22 69 531 - -
Seca11g00417 597 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 59 527 - -
Seca11g00417 597 Pfam Aldehyde dehydrogenase family 60 527 IPR015590 GO:0016491
Seca11g00417 597 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 297 304 IPR029510 GO:0016491
Seca11g00417 597 FunFam aldehyde dehydrogenase 22A1 65 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00417 Seca-Chr11 4051913 4062057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00417 1 596 Aldehyde Dehydrogenase Gene Family AT3G66658 79.027 0.0 1026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00417 - - gmx:100802990 1171.76