Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00392 ATGGGGAGAGCTCCTTGTTGTGAGAAGGTGGGGTTGAAGAAAGGAAGATGGACTGCTGAAGAAGATAAGATCTTGACTGATTACATCCAAGAAAATGGTGAGGGATCTTGGAGGTCCTTGCCCAAAAATGCAGGTTTGTTAAGATGTGGGAAGAGTTGCAGACTGAGATGGATAAACTATTTGAGATCAGATGTGAAGAGAGGGAACATCACTCCTCAAGAGGAAGAGATCATTGTCAAGTTGCATGCTGTTCTTGGTAACAGGTGGTCAGTAATAGCAGGACATTTGCCAGGACGTACAGATAATGAGATAAAAAACTATTGGAATTCTCATTTGAGGAGAAAAATTTACTGCTTCATGAAGTCATTAAATGAGTCTCTCCCTCCCATTGACATGGCAGCTGTTACTTCCAAAAGAAGAGCAAGTAGAGCTACACCAACTCAACTTGTCAAGCAAGAGGACAATAACAACAACCACATTGCTTTCAACCAACAAAAGAAAGACAACATTCCTCAAGTTCAAGTTCAAGTTCAACCAACACATAAAAGATCAAAAGTAACTTCATCACAGAGTTTGAATGCTGCAGAGGCTGAAGTTACTTCTGGATCATGGCACCAACATGGAGAGGACATTCAACAAGGCTATGCTTATGGTGAGAGGGAATGCAACACAAGTGGTACAATTGCCTCATGTCCCAATTTGGATGAAGTTGAGGCATTGGGACCATATCAATGGTTAGATGAAGAAATTATGAAACTTAGTTACATGTTTGAAAGTGGGGTACTTGTAAGCCCTGTTGGGAATGGCATTGTAGAGGATCCTAGCTGTGGTGGAGTAGTGGTGGGTGAAGAGATTATGGGGATGAATGAGGAAAGTAAGAGTGGTGTTTGGAGCTCATCAAATGCAGAGAGTGGAGAATGGAACACTACAAGCTGTTCATCTGTGAATTCTGCTCATGAGTATCAATGGCCTGATATGCATTTAGAAGGTAGTGTTCAATCCTATAATAATCAGTGGGACCTTTATGGTGAAAACCAGAACGTTAATTACTTGTGGGGTACTAGCAGTTGTGAAGTAAGTGGCTTTTATCAGTGA 1095 0.4137 MGRAPCCEKVGLKKGRWTAEEDKILTDYIQENGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKSLNESLPPIDMAAVTSKRRASRATPTQLVKQEDNNNNHIAFNQQKKDNIPQVQVQVQPTHKRSKVTSSQSLNAAEAEVTSGSWHQHGEDIQQGYAYGERECNTSGTIASCPNLDEVEALGPYQWLDEEIMKLSYMFESGVLVSPVGNGIVEDPSCGGVVVGEEIMGMNEESKSGVWSSSNAESGEWNTTSCSSVNSAHEYQWPDMHLEGSVQSYNNQWDLYGENQNVNYLWGTSSCEVSGFYQ. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00392 364 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca11g00392 364 FunFam Myb transcription factor 71 116 - -
Seca11g00392 364 CDD SANT 16 61 IPR001005 -
Seca11g00392 364 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca11g00392 364 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca11g00392 364 Gene3D - 71 116 - -
Seca11g00392 364 FunFam Myb transcription factor 11 67 - -
Seca11g00392 364 MobiDBLite consensus disorder prediction 180 203 - -
Seca11g00392 364 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca11g00392 364 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca11g00392 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca11g00392 364 SMART sant 66 114 IPR001005 -
Seca11g00392 364 SMART sant 13 63 IPR001005 -
Seca11g00392 364 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 198 - -
Seca11g00392 364 CDD SANT 71 112 IPR001005 -
Seca11g00392 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca11g00392 364 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00392 Seca-Chr11 3835264 3837757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00392 1 253 MYB Transcription Factor Family AT5G49330 50.593 7.16e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca11g00392 Myb_DNA-binding 4.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00392 K09422 - gmx:100805532 457.218