Home
Resource
Genome
JBrowse
Transcriptome
Metabolomics
Pan-genome
External database links
Search
Annotation
Pathway
Duplication type
Transposable elements
Regulatory proteins (RPs)
N6-methyladenosine (m6A)
Browse
Syn-based OGs
Gene-families
Synteny
Syn-Blocks
Syn-Dotplots
Deco-Alignments
Pvu_syntenic
Vvi_syntenic
WGDs- Genes
Anc-Genome
Anc-Reference
Tools
All tools
Genome browsing and annotation
Jbrowse
ShinyCircos
Interproscan
iTAK
Dupgen finder
Homology search and alignment
Bl-match
Seq-fatch
Blast
Diamond
Bi-visualazition
Synteny inference
MCScanX
ColinearScan
Synviso
Syn-blocks-stat
B-Dotter
BB-Dotter
BK-Dotter
Evaluation of nucleotide mutation
ParaAT
KaKs calculator
NG-KaKs-Cal
Paleogenome fractionation
Paleo-gene identifier
Syn-deco generator
Paleo-gene_RI
Paleo-gene_RII
P-index-calculator
Multi-syn-phytre
Gene structure and evolution
Codonw
Cpgfinder
MEME
GSDS
Hmmer
Pfam
FastTree
IQ-Tree2
Multigene-align
Heatmap
Lollipop
Gmapping
GF-Circos
Other auxiliary tools
GC-calculator
Seqlenth-calculator
Genstr-counter
Gam-Calculator
SAF-converter
BDI-finder
BDI-deduplicator
BDI-extractor
BDI-combiner
Seq-corrector
Subtree-splitter
Sptaxon-accessor
SS-extractor
WinO-WGDI
Block_run
KaKs calculate
Blast dotplot
Ks dotplot
Block_info
Correspondence
Statistics
Overview
Phylogenetic tree
Identification of polyploidy
Bar chart
Heatmap
Gene function annotation
Functional genes
Transcription factor
N6-methyladenosine(m6A)
Bar chart
Heatmap
Transposable elements
Documentation
Platform Manual
Pipeline flow examples
L-Wikipedia
Species introduce
Literatures
Common pests
Diseases
Economic value
Planting methods
About
Submission
Community
Contact
Gene search
Sequence information
Show
10
25
50
100
entries
Search:
Select
Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Seca11g00391
ATGGTGGATCTGAGTGGAAAAGGATCAGAGGGTGAAGATGCAAACCCTAACTCTGCTTCGTCAGGGAACAGTCCAACCACCAATGAACAGAAGAAAACCTGCGCCGATTGCGGAACCACCAAAACCCCTCTCTGGAGGGGTGGTCCTGCAGGACCTAAGTCACTTTGCAACGCTTGCGGGATCAGAAGCAGGAAGAAGAAGAGAGCGATTTTGGGGATAAGCAAAGGGAACAACGAGGATGGACACAGGAAGGGGAAAAGGAGTAGTAGCAGCAAAGTTGGAGATAGTTTGAGCTTGAAACAGAGACTATTGGCTTTGGGAAGAGAAGTTTCGATGCATCGATCGCATTGGAAGAAATTAGGGGAAGAAGAGCAAGCGGCGGTGTTGTTGATGTCACTATCTTATGGATCCGTTTATGCTTAA
423
0.4823
MVDLSGKGSEGEDANPNSASSGNSPTTNEQKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGISKGNNEDGHRKGKRSSSSKVGDSLSLKQRLLALGREVSMHRSHWKKLGEEEQAAVLLMSLSYGSVYA.
141
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Annotation information
Show
10
25
50
100
entries
Search:
Select
Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Seca11g00391
140
SMART
GATA_3
28
92
IPR000679
GO:0006355|GO:0043565
Seca11g00391
140
Pfam
GATA zinc finger
34
68
IPR000679
GO:0006355|GO:0043565
Seca11g00391
140
SUPERFAMILY
Glucocorticoid receptor-like (DNA-binding domain)
28
68
-
-
Seca11g00391
140
MobiDBLite
consensus disorder prediction
70
98
-
-
Seca11g00391
140
MobiDBLite
consensus disorder prediction
11
37
-
-
Seca11g00391
140
PANTHER
OS01G0976800 PROTEIN
14
140
-
-
Seca11g00391
140
ProSitePatterns
GATA-type zinc finger domain.
34
59
IPR000679
GO:0006355|GO:0043565
Seca11g00391
140
Gene3D
-
28
94
IPR013088
GO:0006355|GO:0008270
Seca11g00391
140
MobiDBLite
consensus disorder prediction
1
57
-
-
Seca11g00391
140
ProSiteProfiles
GATA-type zinc finger domain profile.
28
64
IPR000679
GO:0006355|GO:0043565
Showing 1 to 10 of 11 entries
Previous
1
2
Next
Select All
Download Selected Rows
Duplication type information
Show
10
25
50
100
entries
Search:
Select
Gene
Chromosome
Start
End
Duplicated_type
Seca11g00391
Seca-Chr11
3820008
3821069
Dispersed/Wgd
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Functional genes information
Show
10
25
50
100
entries
Search:
Select
Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Seca11g00391
23
140
C2C2-Gata Transcription Factor Family
AT3G06740
60.484
1.09e-41
134
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Transcription factors information
Show
10
25
50
100
entries
Search:
Select
Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TF
C2C2-GATA
Seca11g00391
GATA
6.1e-17
CL0167
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Pathway information
Show
10
25
50
100
entries
Search:
Select
Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Seca11g00391
-
-
aprc:113847917
229.18
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows