Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00387 ATGTCCCAAACTCGAGGTGTTCATGTTGCAGTTCAGCACATAAGTCCAAATGTGTTGGGTTCGCATTATTGCCGCTTAGATTTGGGTTCTTGGATCTTCTATTCGTGCTTATATTCAGGTTTAATTTACTTCTTGCTCTGTTGGGGCCTTGGATTTGTTGATGGTGAACCCCTTGCTGCTTTTTCTGTCTATTACGGAGTTTTTCTTTCTTTATTGTATTATGTCACTGAAACTTATAATTTCATCAAGGAAGAATTTTGGGATGACCTTGCTGCATCTATAGCAAAAGCATATCTGAGTACAGATCAGGCAATTCTTTCACATAGTTCTGATTTGGGGCATGAAGGATCAACAACTGTAACTGCAATATTAATCAATATCCAAAAGTTATTGATAGCTAATGTAGGAGATTCACGAGCAGTTGTTTAA 429 0.3753 MSQTRGVHVAVQHISPNVLGSHYCRLDLGSWIFYSCLYSGLIYFLLCWGLGFVDGEPLAAFSVYYGVFLSLLYYVTETYNFIKEEFWDDLAASIAKAYLSTDQAILSHSSDLGHEGSTTVTAILINIQKLLIANVGDSRAVV. 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00387 142 SUPERFAMILY PP2C-like 64 142 IPR036457 -
Seca11g00387 142 Pfam Protein phosphatase 2C 85 142 IPR001932 -
Seca11g00387 142 Gene3D - 68 142 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00387 Seca-Chr11 3772541 3775011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00387 75 142 PP2C-type Phosphatase Gene Family AT1G22280 67.647 3.83e-21 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00387 K17506 - gmx:102667117 89.3521