Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00379 ATGGCTTCAACAGACATCAGAGGCATTTTGACAACTTTCAATCCTTCTCTCGACTTCTTCGCAATCACCACTGGCGACGGTCGCGTTAAGGTATGGGACACACTCAAAGGTCAGGTCCAGACCGAGTTTGCAGACATAACTTCAACTCAATCAACTTCTATATATGATAGATCCTTCAACGGTCATCTTTCAGTTGATTATACATGCATCAAATGGTTGTCTTTCGAAAGAAAGAGGAAAAGGAAGCATTTATCCTCATTGTTAGTGCTTGGAACGGGTAGTGGTGATGTTTTAGCACTCGACGTGTCTGCTGGTCAATTGTCTTGGAAAATTAGTGACTGTCATCCTGGAGGTGTGAGAGCCATTTCATCTTCGGCAAATGCATCATGCATTTATACTGCAGGTGCAGATGGGATGATATGCATTATAGATTTCATGAATGGAAATGTGTTGGAGAAATTTAAAGCTTCTTCGAAGGCAGTATCCTGTATGACTGTTTCTACGGATGGGAAGACATTAGCTACTGCAGGAGCACAATTGAAGATTTTTGACTGTTCTAATCACAAAAAGATTCAAAAGTTTTCTGGTCATCCAGGATCTGTTCGGTGTATGGTCTATACTGATGATGGAAAGTATATCCTCTCGTCTGCTGTTGGCGAAAGATATGTTGCTGTTTGGAGGATAGATGGTGCTAAAAAGCAGTCAGCTAGTTGTGTTCTTGCAATGGAGCACCCTGCTGTCTTTCTCGATAGCAGGTGCATTGATAGAGGGGAGCATGATGAGGCTGGCATATGTGTTTTGGCCATCTCAGAAGTTGGTATTTGTTATTTATGGTTTGGAAATAGTATTGAAGAACTACGCAAAGCAAAACCCACAAAAATATCATTATCTTTAGAAGACATGTCCTCCAAAAATTACAAGGGAGCACTGCCTGCAATATATGCTGCAAAATTACAAGGCATCCAGAAGCCAGCTTCTGGGCAGGTTTTTCTTGTTTCTGGGCTGCTTGTGAAACCATCATTTCAAAAAATTGTAGTACATTTCGGTACAGATGTAAAGTTGAATGTCTCCAATGAAGGAGTTCTTCTTCCAATGAGTCAATCTCTTGTCAAATCTAAGAAGGGAACAGGTGTACAAAGAGCAGTTACTGCCCTAGATCGTGCTAATGCTGAAGATGCCTTGCTTCCTATTCCTAAAGTTTTTGATTCTCATGAGAAAGAGAAAACCTTTCAAGATTCTTTGGACCAAGATGTAACAGATGATTTGCATAGAAATAGTAAAGCTGATTCTTTTGAGATAGAAGATGATATGGTCCAAAATGAGATTGATGTATTTTGCATGGAGGACCGGATGAGATCACTGGGGATGCTTTGCAGTGAAAGTGATTGTGCATCAAACTTTGAAATTTGTTCTACATTGTTAAAGGGTATTGATCTGGAAGCCATTCTTCCCACGAAAAAGATAAGAGCAGCCGTTTTGTCTATGGAGCCAACCGAAGCATGCAAGCTGCTAGAAGCGTTGCTAGCTACATGGCAATCAAGGTTTTTATTCCTTTTCTTTAACTTTCCTCTGTAA 1575 0.4044 MASTDIRGILTTFNPSLDFFAITTGDGRVKVWDTLKGQVQTEFADITSTQSTSIYDRSFNGHLSVDYTCIKWLSFERKRKRKHLSSLLVLGTGSGDVLALDVSAGQLSWKISDCHPGGVRAISSSANASCIYTAGADGMICIIDFMNGNVLEKFKASSKAVSCMTVSTDGKTLATAGAQLKIFDCSNHKKIQKFSGHPGSVRCMVYTDDGKYILSSAVGERYVAVWRIDGAKKQSASCVLAMEHPAVFLDSRCIDRGEHDEAGICVLAISEVGICYLWFGNSIEELRKAKPTKISLSLEDMSSKNYKGALPAIYAAKLQGIQKPASGQVFLVSGLLVKPSFQKIVVHFGTDVKLNVSNEGVLLPMSQSLVKSKKGTGVQRAVTALDRANAEDALLPIPKVFDSHEKEKTFQDSLDQDVTDDLHRNSKADSFEIEDDMVQNEIDVFCMEDRMRSLGMLCSESDCASNFEICSTLLKGIDLEAILPTKKIRAAVLSMEPTEACKLLEALLATWQSRFLFLFFNFPL. 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00379 524 Pfam WD domain, G-beta repeat 190 226 IPR001680 GO:0005515
Seca11g00379 524 PANTHER OS03G0300300 PROTEIN 3 514 - -
Seca11g00379 524 Gene3D - 7 249 IPR015943 GO:0005515
Seca11g00379 524 SMART WD40_4 3 33 IPR001680 GO:0005515
Seca11g00379 524 SMART WD40_4 104 144 IPR001680 GO:0005515
Seca11g00379 524 SMART WD40_4 147 184 IPR001680 GO:0005515
Seca11g00379 524 SMART WD40_4 187 227 IPR001680 GO:0005515
Seca11g00379 524 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 12 230 IPR011047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00379 Seca-Chr11 3692821 3701038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00379 115 226 U-box Gene Family AT2G33340 28.448 1.10e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00379 K14546 - gmx:100815458 848.195