Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00360 ATGTGTGGTGGTGCAATTATTTCTGATTACATAGATGACAACCCCAAGCTTGGTGGCCGGAGATTGACCACCGACGACATCTGGTCAGAGGTTCACACTTTCTCTGACCTCCTTGGTTTCGAAGTCGCCTCTTTCAACCACCAACCACCTTTCTCCCACCTTCATCATCCCAACCTCCCTCTAAAACCAAACAACAAAGTGGAGAAGGTGGAGAAGAAAAAAGTGGTGGTGGCAAATAAGGAAAGAGGCAAGAGTGAACGGGTTCGGAAGAACGTGTACAGAGAAATCAGGCAAAGGCCATGGGGGAAGTGGGCCGCTGAGATAAGGGACCCACACAAGGGTGCACGTGTCTGGCTCGGCACCTTCAACACCGCCGAAGAAGCCGCCCTCGCTTACGACGCTGCCGCTAAGCGCATCCGCCGAGACAAGGCCAAGCTCAACTTTCCAGACAAGAAGCCTTGCCTCAGCCCAGAGCCCAGTGGGCCACCCGAGGCCCACGGTGACCAGGATCCTGATCAGCTGAAGCATCAAATCGAATCATTCCTGGGTTTAGAATTAGAGCATGAGAATGCTCAGGCTCAGGCTCAGGTGCTTGGTGTTGGTGAATGGGACAGGGACCTATGGACGCTGGACGACGTCGTTATGTCCAACCGTCACCTGTTTTCAGGCGGAATTTGA 678 0.5339 MCGGAIISDYIDDNPKLGGRRLTTDDIWSEVHTFSDLLGFEVASFNHQPPFSHLHHPNLPLKPNNKVEKVEKKKVVVANKERGKSERVRKNVYREIRQRPWGKWAAEIRDPHKGARVWLGTFNTAEEAALAYDAAAKRIRRDKAKLNFPDKKPCLSPEPSGPPEAHGDQDPDQLKHQIESFLGLELEHENAQAQAQVLGVGEWDRDLWTLDDVVMSNRHLFSGGI. 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00360 225 FunFam Ethylene-responsive transcription factor 2 91 150 - -
Seca11g00360 225 CDD AP2 93 150 IPR001471 GO:0003700|GO:0006355
Seca11g00360 225 Pfam AP2 domain 93 140 IPR001471 GO:0003700|GO:0006355
Seca11g00360 225 MobiDBLite consensus disorder prediction 147 171 - -
Seca11g00360 225 Gene3D AP2/ERF domain 92 150 IPR036955 GO:0003700|GO:0006355
Seca11g00360 225 PANTHER DNA-BINDING DOMAIN 74 164 IPR044808 GO:0003700|GO:0009873
Seca11g00360 225 ProSiteProfiles AP2/ERF domain profile. 92 149 IPR001471 GO:0003700|GO:0006355
Seca11g00360 225 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Seca11g00360 225 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
Seca11g00360 225 SMART rav1_2 92 155 IPR001471 GO:0003700|GO:0006355
Seca11g00360 225 SUPERFAMILY DNA-binding domain 92 150 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00360 Seca-Chr11 3513702 3516076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00360 1 216 AP2-EREBP Transcription Factor Family AT3G16770 44.487 5.16e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g00360 AP2 3.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00360 K09286 - gmx:100817253 180.644