Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00359 ATGAACCCTAATCCTCCTAACCGTGGCCGGAGATTGACCACCGAGGACCTCTGGACTACGTCTGAGGAGGGTGACACTTTCTCTTACCTTCTTTGTTTCGACGGTACCGCTACCTCTTCTTCAGAAACCTACTTTCACTTCGATCATCCACAGCTCCCTTTTTTTTCAAACAACCACAAAGCTGCAGCTGCAGTGGGGACATGTGATCAGAAGGTGGAGAAGAAGAAAAGAGTGGTGGTTGAGAAGAAGGGTGAGCAGCGGGTTCGGAAGAATTTGTACAGAGGAATCAGACAAAGGCCATGGGGCAAGTGGGCTGCTGAGATTAGAGATCCACGTAAAGGTATAAGGGTCTGGCTTGGCACCTTCAACACTGCCGAAGAAGCCGCCCTCGCTTACGACGCCGCCGCCCTACGCATCCGTGGAAACAAGGCCAGGCTCAACTTTCCACCCAAGATCAAGCGCTGCCTCAACCCAGAGCCCACTCAGCCCACTGGGCCTCCGCCTTGCATTCCCCAGGCCCAGGATCCTGATCAGCTGAAGCAACAAATCTCCACCCTTGAATCATTCCTGGGTTTGGAGCATGAGCCTCAGCCTGAGGTGCAGTGGGACTCACTCTACAGGGACCTGTGGACGCTAGACGACATCGTTATGCCCAACCGTCACCTGTTCTCAAACGGAATTTGA 684 0.5351 MNPNPPNRGRRLTTEDLWTTSEEGDTFSYLLCFDGTATSSSETYFHFDHPQLPFFSNNHKAAAAVGTCDQKVEKKKRVVVEKKGEQRVRKNLYRGIRQRPWGKWAAEIRDPRKGIRVWLGTFNTAEEAALAYDAAALRIRGNKARLNFPPKIKRCLNPEPTQPTGPPPCIPQAQDPDQLKQQISTLESFLGLEHEPQPEVQWDSLYRDLWTLDDIVMPNRHLFSNGI. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00359 227 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
Seca11g00359 227 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Seca11g00359 227 CDD AP2 93 149 IPR001471 GO:0003700|GO:0006355
Seca11g00359 227 Gene3D AP2/ERF domain 92 150 IPR036955 GO:0003700|GO:0006355
Seca11g00359 227 ProSiteProfiles AP2/ERF domain profile. 92 149 IPR001471 GO:0003700|GO:0006355
Seca11g00359 227 FunFam Ethylene-responsive transcription factor 2 91 151 - -
Seca11g00359 227 SUPERFAMILY DNA-binding domain 92 150 IPR016177 GO:0003677
Seca11g00359 227 PANTHER DNA-BINDING DOMAIN 73 166 IPR044808 GO:0003700|GO:0009873
Seca11g00359 227 SMART rav1_2 92 155 IPR001471 GO:0003700|GO:0006355
Seca11g00359 227 Pfam AP2 domain 93 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00359 Seca-Chr11 3497610 3498789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00359 8 216 AP2-EREBP Transcription Factor Family AT3G16770 38.645 9.48e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g00359 AP2 4.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00359 K09286 - qsu:112020180 163.696