Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00349 ATGGACAACATGAAGAGCAACGAAAGGCAATACAATTACGCCCTCAGCGGCAAGATTATGTTAGTTTCCATTGTCGTCCTCTTCATCGTTATCATCATAATGATTTGCCTTCACGTCCAAATTCGCTGGTACCTTATACATGCACGCCGCCGCCAACATCTCCGTCGCACCCGCCACACTCGCCGACCGCAGTTCGTCTTCTACGTCGACCCCACCGCCCCCATCGCACTCACTGTCGCCTATCGCGGCCTCCCTGCTTCCGTCATCTCCTCCCTCCCCGTTTTCACCTTCTCCCCCAACACCCACCCGGAGCCAGTGGATTGTGCTGTTTGTTTGTCGGAATTCGAAGACGGGGAATCGGGTCGGGTCCTGCCCAAATGCAACCACACCTTCCACATTGACTGCATCGACATGTGGTTCCAGTCTCACTCCACCTGCCCCCTTTGCAGGGCACCCGTGGAGCCCCTACCCGCTGGTGAGACCCGACCCGGAGTGACTGTAACGGAACCGGGTTCGAGTTCCGGGTTGTGCGTGGAGAGCCAGCGCGGTGGGGAAGAGTTGAATCGGTCAGGACCGGTGGTTTCTTCTTCTTCATCTTGCCAGACTGGGAAGCCGTCGGCGCTGGTGGGTGTGACGGTTGAGATTCCTGGAAGAAACGACGGAGGCGAGTCGGGTTGTGAGACGCCGTCGTCGTTTCGGTCGCCGCTGAGTCGCGTGTTGTCGTTGACGAGAATTCTCAGCAGAGAGAGGAAAGCAAGCGTTTCTCCATCGTGGAGTTGTGAAGCAGGGTGCAGCAGCTCCAAGAACGAGTTAGACGCAGAACGAGGCGGAAGAGATGAGACTCAGTGA 849 0.5713 MDNMKSNERQYNYALSGKIMLVSIVVLFIVIIIMICLHVQIRWYLIHARRRQHLRRTRHTRRPQFVFYVDPTAPIALTVAYRGLPASVISSLPVFTFSPNTHPEPVDCAVCLSEFEDGESGRVLPKCNHTFHIDCIDMWFQSHSTCPLCRAPVEPLPAGETRPGVTVTEPGSSSGLCVESQRGGEELNRSGPVVSSSSSCQTGKPSALVGVTVEIPGRNDGGESGCETPSSFRSPLSRVLSLTRILSRERKASVSPSWSCEAGCSSSKNELDAERGGRDETQ. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00349 282 SMART ring_2 108 149 IPR001841 -
Seca11g00349 282 MobiDBLite consensus disorder prediction 250 282 - -
Seca11g00349 282 MobiDBLite consensus disorder prediction 250 266 - -
Seca11g00349 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 155 IPR013083 -
Seca11g00349 282 FunFam RING-H2 finger protein ATL3 76 155 - -
Seca11g00349 282 MobiDBLite consensus disorder prediction 161 201 - -
Seca11g00349 282 Pfam Ring finger domain 107 150 IPR001841 -
Seca11g00349 282 CDD RING-H2_EL5-like 107 150 - -
Seca11g00349 282 MobiDBLite consensus disorder prediction 215 234 - -
Seca11g00349 282 SUPERFAMILY RING/U-box 88 156 - -
Seca11g00349 282 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Seca11g00349 282 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 157 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00349 Seca-Chr11 3435101 3435949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00349 12 279 Rapid Response to Elicitors AT3G16720 45.051 1.96e-67 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00349 - - pvy:116135583 275.018