Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00323 ATGCTCAGTCCTGAAGGAGAACTTAAAATAAGTTTTGGCTATAAATGTAATAGTTATAAAGGCATTCCTTGTGAGATCACCAATGGCTACAAAATTCTTCCTGATGTTCGTAGAACAAGCAGTTTCTCTTGCTTGTCAGGTGCAGCCTTAAGTGCAAATGCTACACTAGCCAACACAAACATCTGCAACGGCAAGATAGGAGGAGAAATTCTTCCAAGTTGGGACTCTCCTAATTCATTTCGTAAAGTACCCTCTTCTCCAAGTCTTTCAAAGTTGGACAGACTATCATCTTCCCTCCCAAATAGTTTGTCTTACCTAAGCTGCAGTCCTTCCACTCCAAGTGATATCCTTGAATATGACTCTTGCACATCAAAATCCATGAGTGATCTTTCCAGAAATGAAGGCTTTCTTAATGCTGAGGAAGTTCAAGTAGCAGGAGGAGCTGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCTGAAGAAAATGGGTGGCTCTTTTGTGCAATTTATGATGGCTTTAATGGGAGAGACGCGGCTGACTTTCTGGCTGGTACCCTGTATGACACCATCATATCTTACTTAGATAAGTTAATTTGGGAATTGGATCCGGGTTTGATCAAAGCTTCTAACAGCGTGGGTTTGGGTGAAGCCCTTCAATATAAGTTGGATTATAGTCTTATTCATCATGAGGATCAATCTCTGTCAAGATTCAAGGGGAGAAATGATTGTGATCATGGTTGTTTTGCAAAGGGTAGTCCATCTACTAAGTCAGAAGCATCATGTGACTCATTTTCAAATGGGGTACTTGATAGCCTCCAACGTGCTCTTAGTCAGGCTGAGAATGATTTCCTGTACATGGTTGAGCAGGAAATGGAGGAACGTCCAGATTTAGTTTCTATTGGATCTTGTGTTTTACTTTTGCTTCTTCATGGTAATGATCTGTATACACTGAATCTAGGTGATAGCAGAGCAGTATTAGCAACATGCAGTACAGGTGACAGACTGAATAAGAGTGAGAGGCTCCAGGCTATACAGCTTACAGATAGTCATACAGTTGAAAATGAAGCTGAAAGAGCTAGACTTATGGCTGATCATCCTGATGATTCCAAGGTCATTATAGCAGGAAAAGTGAAAGGTAAACTGAAGGTTACTCGTGCATTTGGAGTTGGCTACTTGAAAAAGAAAAATCTGAATGATGCTTTGATGGGAATCCTTCGAGTTCATAATCTCACAAGCCCACCATATATTTCCACTCAACCATCACTGAATGTCCATAAAATCTCAAGTGCTGATCAGTTTGTTATAGTAGGGAGTGATGGTTTATTTGACTTCTTCAGCAATGATGAGGCAGTAAAGCTTGTAGAGTCTTATATCTTGAGCAATCCTTTGGGTGATCCTGCAAAGTTTCTCATAGAGCAACTTGTAGCTAGAGCAGCTGATTCTGCAGGTTTCAGCATGGAAGAGTTGATGAATATTCCAGCTGGGAGGAGAAGAAAATACCATGATGATGTGACCGTAATTGTGATCATGCTTGGGATGAATCAGAGGACTTCAAAGGCTTCAACCTGCATCTAG 1575 0.4083 MLSPEGELKISFGYKCNSYKGIPCEITNGYKILPDVRRTSSFSCLSGAALSANATLANTNICNGKIGGEILPSWDSPNSFRKVPSSPSLSKLDRLSSSLPNSLSYLSCSPSTPSDILEYDSCTSKSMSDLSRNEGFLNAEEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYDTIISYLDKLIWELDPGLIKASNSVGLGEALQYKLDYSLIHHEDQSLSRFKGRNDCDHGCFAKGSPSTKSEASCDSFSNGVLDSLQRALSQAENDFLYMVEQEMEERPDLVSIGSCVLLLLLHGNDLYTLNLGDSRAVLATCSTGDRLNKSERLQAIQLTDSHTVENEAERARLMADHPDDSKVIIAGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVHNLTSPPYISTQPSLNVHKISSADQFVIVGSDGLFDFFSNDEAVKLVESYILSNPLGDPAKFLIEQLVARAADSAGFSMEELMNIPAGRRRKYHDDVTVIVIMLGMNQRTSKASTCI. 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00323 524 ProSiteProfiles PPM-type phosphatase domain profile. 136 511 IPR001932 -
Seca11g00323 524 PANTHER PROTEIN PHOSPHATASE 2C 142 509 IPR015655 GO:0004722|GO:0006470
Seca11g00323 524 SMART PP2C_4 127 509 IPR001932 -
Seca11g00323 524 SUPERFAMILY PP2C-like 150 512 IPR036457 -
Seca11g00323 524 FunFam Probable protein phosphatase 2C 40 117 520 - -
Seca11g00323 524 Pfam Protein phosphatase 2C 272 475 IPR001932 -
Seca11g00323 524 Gene3D - 112 520 IPR036457 -
Seca11g00323 524 CDD PP2Cc 149 509 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00323 Seca-Chr11 3213911 3217682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00323 4 524 PP2C-type Phosphatase Gene Family AT3G16560 62.429 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00323 - - gmx:100808304 879.011