Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00309 ATGCGATCCCATCAAAAGGGTTTTGCCAAGTTTGAATTTTTAGCCTCCAAAGGTGCTTCTCCCTCTGATATTGTTGTCATGGTGACTAGGAGCCCACGTTTTCTGCGAGTAAGCCTTGAGCACATAATCTCGGCGTTTGAATTGGTAAGGAGATTCTTTCCATCTGATAGAAAAGCCATTGTTTGTTTAATTGCTTGTCCCAGTTCCTTTGGTGATCCTCGTGTGGAATCAAATGTGAACTTGTTGCTTGATTTTGGAGTCACTCTCTCAAACATTTACCATTTGCTTCGTACTAGGCCCTCTGTACTCTCCTCCTATGACTTAGGCAGGGTCGTAGAGGAAGTAAAGGGATTGGGATTTGATCCTTCCAAATTAAATTTTAGCGTAGCATTACTAGCCAAAAGGGCTATAACCAAATCCCAGTGGGATGCCAAAGTTGATGCCTTTAAGACCTGGGGCTGGTCCGAAGATGCAATTTTACATGCATTTAGGAGGCAGCCCAACTTTATGCTACGGTCTACGGACAAGCTCAATGCAGTGATGAGATTTTGGGTTGGCCAGCTTGGTTGGGATCCTTCAGTGTTTCAAGCATCACCAATACTTTTTGGATCTAGTTTGGAGAAAAGGCTTATTCCAAGGGCTTCAATTGTTCAGTATCTTCTCTCTAGAGGTTTGATGAAGAAGGGTGCTAGCTTAATTACACCATTTAGTTTGTCTGACAAGCTGTTCCTGCAAAGACCTCTTCTGAACCGCAACACTATCACTATCTTCCAACTATCTCTGTCACCAACCCCAAAATGTTACCCTTTTCTGAAACCCCACCCATACCCATCGTCAATCTCTCTCAAATGCTTCTCAACCACTTCACATCAACAACCTTTCATCATATCCTACCTCACAAACAATTGTGGTTTCTCACCACAAGCTGCTCTAAAAGCATCCAAGAATCTCTATTTTGACACCTCCCAGAAGCCCGATTCTGTTATCGCCTTCTTCAGAGACCATGGTTTCTCTCTCCCCCAGATACACAACATCATTGGCAGGATTCCGAATTTGCTTGTATGCAACCCCATCAAAAGGGTTTTGCCCAAGTTTGAATTTTTAGCCCCCAAAGGTGCTTCTCCCTCCGATATTGTTACCATGGTGACTAGGAGCCCGCGTTTCCTGCGTTCAAGCCTTGAGAATCACATAATCCCTGCATTTGAATTAGTAAGGAGATTCTTTCCATCTGATAGAAGAGCCATTGTTTGTGTAATTGCTTGTCCCAGTTCCATTGTTGATCCTCGCTTGGAGCAAAATGTGAACTTGTTGCTTGAATTTGGAGTGTCTCCCTCAAACATTCGCTATCTGCTTTGTACTAGGACCTCTATACTCTGCTCTGCTATCTTGAGGAAAGTCATGGAGGAAATAAAGGGATTAGGATTTGATCCTTCCAAAATAAATTTTATTGTAGCATTACTGGCTGAAAGGGCTGTAACCAAATCCCAGTGGGATGCCAAAGTTGATACCTTGAAGACCTGGGGCTGGTCTGAAGATGCAATTTCACATGCGTTTAAGAAGGATCCCTGCTTCATGATACGGTCTACGGACAAACTCAATGCTGTGATGAGTTTTTGGATCCGCCAGCTTGGTTGGGATCCTTCTCCTCTTCTAGCATTTCCTATACTTTTTGGATATAGTTTGGAGAAAAGGCTTATTCCAAGGGCTTCAGTTGTTCAGTATCTTCTCTCCAAAGGTTTGATGAAGAATGGTGCTAGCTTAGCTACACCATTTCGTATTTCTGATGAGTTGTTCCTGCAAAGGTTTGTGAATTGTTTTGAGAAGGAGGAAGCATCTAGGCTACTAAGGTTATATCAAGGAGGATGCTAG 1869 0.4307 MRSHQKGFAKFEFLASKGASPSDIVVMVTRSPRFLRVSLEHIISAFELVRRFFPSDRKAIVCLIACPSSFGDPRVESNVNLLLDFGVTLSNIYHLLRTRPSVLSSYDLGRVVEEVKGLGFDPSKLNFSVALLAKRAITKSQWDAKVDAFKTWGWSEDAILHAFRRQPNFMLRSTDKLNAVMRFWVGQLGWDPSVFQASPILFGSSLEKRLIPRASIVQYLLSRGLMKKGASLITPFSLSDKLFLQRPLLNRNTITIFQLSLSPTPKCYPFLKPHPYPSSISLKCFSTTSHQQPFIISYLTNNCGFSPQAALKASKNLYFDTSQKPDSVIAFFRDHGFSLPQIHNIIGRIPNLLVCNPIKRVLPKFEFLAPKGASPSDIVTMVTRSPRFLRSSLENHIIPAFELVRRFFPSDRRAIVCVIACPSSIVDPRLEQNVNLLLEFGVSPSNIRYLLCTRTSILCSAILRKVMEEIKGLGFDPSKINFIVALLAERAVTKSQWDAKVDTLKTWGWSEDAISHAFKKDPCFMIRSTDKLNAVMSFWIRQLGWDPSPLLAFPILFGYSLEKRLIPRASVVQYLLSKGLMKNGASLATPFRISDELFLQRFVNCFEKEEASRLLRLYQGGC. 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00309 622 FunFam Mitochondrial transcription termination factor-like 39 250 - -
Seca11g00309 622 Gene3D Transcription termination factor 3, mitochondrial 425 611 IPR038538 -
Seca11g00309 622 Gene3D Transcription termination factor 3, mitochondrial 71 249 IPR038538 -
Seca11g00309 622 Gene3D Transcription termination factor 3, mitochondrial 299 424 IPR038538 -
Seca11g00309 622 FunFam Mitochondrial transcription termination factor-like 393 610 - -
Seca11g00309 622 SMART mt_12 515 546 IPR003690 GO:0003690|GO:0006355
Seca11g00309 622 SMART mt_12 547 581 IPR003690 GO:0003690|GO:0006355
Seca11g00309 622 SMART mt_12 160 191 IPR003690 GO:0003690|GO:0006355
Seca11g00309 622 SMART mt_12 343 374 IPR003690 GO:0003690|GO:0006355
Seca11g00309 622 SMART mt_12 412 443 IPR003690 GO:0003690|GO:0006355
Seca11g00309 622 SMART mt_12 448 476 IPR003690 GO:0003690|GO:0006355
Seca11g00309 622 SMART mt_12 192 226 IPR003690 GO:0003690|GO:0006355
Seca11g00309 622 SMART mt_12 379 409 IPR003690 GO:0003690|GO:0006355
Seca11g00309 622 Pfam mTERF 141 243 IPR003690 GO:0003690|GO:0006355
Seca11g00309 622 Pfam mTERF 10 121 IPR003690 GO:0003690|GO:0006355
Seca11g00309 622 Pfam mTERF 496 599 IPR003690 GO:0003690|GO:0006355
Seca11g00309 622 Pfam mTERF 330 533 IPR003690 GO:0003690|GO:0006355
Seca11g00309 622 PANTHER CGI-12 PROTEIN-RELATED 295 610 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00309 Seca-Chr11 3100286 3104026 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca11g00309 mTERF 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00309 K15032 - gmx:102666739 357.066