Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00308 ATGGAGGATAATGTTGGAAGCAGTTCCTGTAATGATAATATTGGCATCAAGGAACAGGACCGGTTGTTGCCAATAGCTAATGTTGGAAGAATCATGAAGCAGATTTTACCTCAGAATGCAAAAATCTCAAAGGAATCAAAGGAAACAATGCAAGAGTGTGCGTCAGAGTTCATAAGCTTTGTAACCAGTGAAGCATCAGAGAAGTGTAGGAAGGAAAGGAGGAAGACTGTGAATGGAGATGACATCTGCTGGGCCTTGGGGACTCTTGGTTTTGATGAGTATGCAGAGCCAATGAGAAGGTATTTGCATAGATACAGAGAACTAGAGGTAGATAATAGAACTAATCAAGAAAGAGGAAATAGCCCTGAAGAGAAGGATTGGCCCCCCAGAGGAACTAGACAGTAA 405 0.4198 MEDNVGSSSCNDNIGIKEQDRLLPIANVGRIMKQILPQNAKISKESKETMQECASEFISFVTSEASEKCRKERRKTVNGDDICWALGTLGFDEYAEPMRRYLHRYRELEVDNRTNQERGNSPEEKDWPPRGTRQ. 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00308 134 ProSitePatterns NF-YB/HAP3 subunit signature. 53 69 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca11g00308 134 Gene3D Histone, subunit A 11 129 IPR009072 GO:0046982
Seca11g00308 134 MobiDBLite consensus disorder prediction 106 134 - -
Seca11g00308 134 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 116 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca11g00308 134 FunFam Nuclear transcription factor Y subunit B-6 11 126 - -
Seca11g00308 134 SUPERFAMILY Histone-fold 19 120 IPR009072 GO:0046982
Seca11g00308 134 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Seca11g00308 134 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
Seca11g00308 134 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Seca11g00308 134 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 86 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00308 Seca-Chr11 3088587 3088991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00308 16 119 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.115 3.36e-55 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca11g00308 CBFD_NFYB_HMF 9.5e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00308 K08065 - gmx:100794513 211.46