Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00301 ATGTTCAGTCCGAGCATGGATTCTGCGAGGGACGGGGGTGCTGTTGCAGGGACGGTGCTAATTCCCATGCGGTTTGTGTGGCCATATGGGGGAAGAAGTGTGTATCTCAGTGGTTCTTTTACGCGGTGGTCTGAGCTTCTACAAATGTCGCCAGTCGAAGGTTGCCCAACTGTGTTTCAAGTTATTCATAGCTTGGCCCCTGGTTATCATCAGTATAAGTTTTTTGTTGATGGAGAATGGCGGCATGACGAACATCAGCCTTATATATCTGGAGAATATGGGATAGTTAACACAGTTTTATTGGCTACTGATCCTAATTTCGTACCTGGTTTAACTCCAAACATAGTTTCTGGATCTAACATGGATGTTGATAATGAGGCTTTTCGGCGTATGGTAAGAGTTCGATTGACAGATGGTACATTGAGTGAGGTGTTTCCAAGAATATCAGATGTTGATGTACAGACCTCGCGTCAGCGTATTTCTGCATTCCTGTCTATGCGCACAGCTTATGAATTACTTCCTGAGTCAGGCAAGGTTGTTACCTTGGATATTGATTTGCCAGTGAAACAGGCGTTTCACATACTGCATGAGCAGGGAATTCCCATGGCTCCTCTTTGGGACTTCTGCAAGGGGCAGTTTGTTGGAGTCCTCAGTGCTTTGGATTTTATTTTAATTTTAAGAGAGCTAGGGAATCATGGGTCCAATTTGACAGAAGAGGAGCTTGAAACACATACCATATCAGCTTGGAAAGAAGGAAAATGGACAGCATTTTCCAGACGTTTTATCCATGTAAGCGTTTTATATGGCTTTTTCATGCAGGCAGGGCCGTATGATAATTTGAAAGATATTGCTGTGAAGATCTTGCAAAATGAAATTTCAACAGTTCCTATTATTCATTCATCATCTGAAGATGGTTCATTTCCACAGCTACTACATCTCGCTTCACTTTCAGGAATCCTTAAATGCCTTTGCAGGTATTTTAGGCATTGTTCTAGTGCATTGCCTATACTTCAACTTCCAATCTGCACAATTCCTGTGGGCACATGGGTGCCCAAAATTGGGGAGTCAAATCGCCGGCCACTTGCAATGTTGAGACCAAGTGCTTCACTTACTTCAGCCCTAAACTTATTAGTTCAAGCTCAAGTAAGTTCAATACCGATAGTTGATGATAATGACTCATTGCTTGATATATATTGTCGGAGTGATATAACAGCCTTGGCGAAGGACAGAGCTTATACACACATTAATCTTGATGAAATGACTGTTCATCAGGCAAGTTTGAATTTTCATTTTTGTATTCCAATAAACTTCTGTTGA 1317 0.4184 MFSPSMDSARDGGAVAGTVLIPMRFVWPYGGRSVYLSGSFTRWSELLQMSPVEGCPTVFQVIHSLAPGYHQYKFFVDGEWRHDEHQPYISGEYGIVNTVLLATDPNFVPGLTPNIVSGSNMDVDNEAFRRMVRVRLTDGTLSEVFPRISDVDVQTSRQRISAFLSMRTAYELLPESGKVVTLDIDLPVKQAFHILHEQGIPMAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKEGKWTAFSRRFIHVSVLYGFFMQAGPYDNLKDIAVKILQNEISTVPIIHSSSEDGSFPQLLHLASLSGILKCLCRYFRHCSSALPILQLPICTIPVGTWVPKIGESNRRPLAMLRPSASLTSALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDRAYTHINLDEMTVHQASLNFHFCIPINFC. 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00301 438 SUPERFAMILY CBS-domain pair 356 421 IPR046342 -
Seca11g00301 438 SUPERFAMILY E set domains 21 102 IPR014756 -
Seca11g00301 438 CDD E_set_AMPKbeta_like_N 22 100 - -
Seca11g00301 438 SUPERFAMILY CBS-domain pair 158 329 IPR046342 -
Seca11g00301 438 Gene3D - 149 331 IPR046342 -
Seca11g00301 438 Pfam CBS domain 358 404 IPR000644 -
Seca11g00301 438 Gene3D - 332 430 IPR046342 -
Seca11g00301 438 FunFam Sucrose nonfermenting 4-like protein 18 103 - -
Seca11g00301 438 Pfam Glycogen recognition site of AMP-activated protein kinase 21 104 IPR032640 -
Seca11g00301 438 ProSiteProfiles CBS domain profile. 172 234 IPR000644 -
Seca11g00301 438 SMART cbs_1 360 408 IPR000644 -
Seca11g00301 438 SMART cbs_1 178 227 IPR000644 -
Seca11g00301 438 Gene3D Immunoglobulins 21 108 IPR013783 -
Seca11g00301 438 ProSiteProfiles CBS domain profile. 356 413 IPR000644 -
Seca11g00301 438 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 154 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00301 Seca-Chr11 3016105 3026215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00301 11 115 Protein tyrosine phosphatase (PTP) family AT3G01510 30.841 4.87e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00301 - - aprc:113874669 771.155