Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00300 ATGGCCCCTTCTAGGAAATCTAGAAGTGTAAATAAGAAGTTTTCTAATATTCGTGAGGCTGCATCTAGTAAAGATAAGGATGCAGCGAATGCTAGCAAGAATAGACAGAAGGCAAGTGCTGGTATTCAGAAGAAGAGAAAATTGACTGACATGTTAGGGCCACAATGGAGTAAGGAAGAGCTTGAGCAATTCTATGAAGCTTACCGTAAATTTGGGAAAGATTGGAAGAAGGTTGCTCTCGCAGTACGTAGTAGATCTATGGAAATGGTAGAAGCCCTGTACACTGTGAACAGGGCATACTTATCTCTTCCAGAAGGCACTGCTTCTGTTGTTGGACTGATAGCAATGATGACAGATCATTATAGTGTACTGGGAGGAAGTGACAGTGGAAAAGAAAGCAATGAAGATGCAGAAATATCTAAAAAGTCTCAAAAACGTTTACGGAGAAAGCATCTAAATGACAATAAAGCATTAGATGGACACGTTTCAGATCATTCTCAGTCTCATTCTGTTGCATCAGGTGATGGTTGCCTGTCATTGTTGAAGAAGAGGCATTCTGGAATTAAGCCTCATGCTGTTCGAAAAAGAACTCCCCGTGTCCCTATTTCATATTCTATTGGTAGAGATAACGGGGAGAAGTTTTTTTCACCTGCTAGGCAGGGCTCCAAACAAATGGTTGATACTAATGATGTTGCTCATAAGATTGCATTAGCATTGACAGAGGCTTCACAAAGAGGTGGCTCTTCAAAAATTTCTGGATCACCAAACAAGAAAAATATGCCATCACCTGATCTGAAAAATGAGAAGGTACGTGTTAAATCAGAAAAGGCAGGGGCCAAGTTTTGCAGTTCTGACATGGATGGGGATAGTTCTGAGTTGAGTTTAGGAAGCACAGAAGGTAATAATGGAGAGTATTCTAAAAAAACAATTCATCAGAGAAGTAGAGAAAATACTGGAAGAGGAAGGAACCGGGAAAAGGGAGTAAAACACTATGGGAAGAATTTAGAACCTGAGGAAAACTCAAACAAGCATTTGAGTGACATAAAGGAGGCCTCCAGTGGGACAGATGATGGTAAAAATATGCGTTTCATCAAATCCAATTTTAATACAGATTTTGCAGATGCAAAAAATGCAGGGTCCTCTTATAAGGGTTCCAGGAAAAAAAGTAAAAAACTACTGTTTGAGAAAGATGAAGGTTCTGCTTTTGATGCCCTGAAAGCTTTGGCTGATCTATCTTTGATGATGCCAGTAACAAACCCTGACACCGAGTCATCTGCACAGGTCAAGGAAGGAAACCATGATGTTGTTGGTGAATCTAAAATGGAAAGACATAATGTATTTCCTAGGATTGATAGCACTACTTCAAGTAAATTGGGCAAGGTTTATTCTGATAATAATGGAGCTGCTGCTACTGAAGCAGAGGGAGCATACCAGCTTAATGCAGGAATCAGGAAAAGAAAACAAAAATCTTCTACCTTAAAAAATGATGAAACACATACTGCTGCTCATTTAAGTGGTTCCCAGAAAACCAAGGTTACTGATGAGGTGAAAAAGTCCATCGTTAAAGGGAAGCGCTCATCAGTTTGTACAGCACACTCAAGACAACTAAAAGTGGTGAAATCCCCGGGAAATATGTCTTCAAATACTAATGACAAAGGGGAAAGAGATGATTCATCATTTTCCCCCATAAAGGTTTTGTCTACTAACCAAGTCAGTCAAGTAAACAGAGGAAGGCCTAGAAGAAAGATGGAAAAACCAAAACCAATGATCCGACGAGATCTGACGGTGTCTGGAAATATCTTTAGTGGTCATAATAAATATTCTAGTGAGAAGGTCAGTTATTTGTCATTTGTGCTCAAGGGAATGCTTATCAATTGCCTGTCTTCATATCAAATGCGGCGATGGTGCACTTTTGAGTGGTTTTATAGTGCTATTGATTACCCATGGTTTTCAAAGAAAGAGTTTGTAGAGTATTTAGACCATGTTGGATTGGGTCATGTTCCGAGATTGACTCGTATTGAGTGGGGAGTTATTAGAAGTTCTCTTGGTAGACCACGGAGATTTTCAGAGCAATTTTTGATAGAAGAAAAAAATAAACTTAATCAATACCGGGAATCTGTCAGATCACATTATGCTGAAGTTCTTGCCGGTACCAAGGAAGGCCTTCCTACTGATTTGGCCCAACCATTAATTGTTGGGCAGCGTGTGATTGCTATTCATCCAAAGACAAGAGAGATTCATGATGGAAGTATACTGACTGTAGACCATTGTAGGTACAGGGTTCAGTTTGACCAGCCTGAACTTGGGGTTGAATTTGTCACGGATATTGACTGCATGCCTTTGTATCCATCTGAAAATATGCCCACATCTCTGATAAGAAACAATATCACTCCTGAGAACCTTAATGATCCGAAGCTTAATGGGAAACTGAGACAAAGAAAGATTGCTGAGCACCCGATATTGTCCCCTAGTGAGAATTCAGATAACCTTAAAGGTCTTTATATATCCCCTACTATGCATGGAAGCAGAACTTCATCAAAACAGGGATTTTATTCAGGCTGCAAATCGCAAGCAAAAGTTGTGTTCAGTGAGTTTGGTAGTGCCCAACTAGCATCAAGTTCTCAACCTTCCCTTCTTGAACATGTCCACTCAAAAGATGCTGACATATTAGCAATTTCAGAGTTGGCTCGTGCTCTAGACAAGAAGGAACTTGTCTTGTCTGAACTGAAGCACATGAATGACGGGGTATCAGAAAGCCAGAAATATGGAGACAGCTCAGTGAAGGATTCAGAACCTTTTAAGAGGAATTATGCTTCAGTAATAAAGCAATTAACTGAAGCAAATGAACAGGTGTCTTCTGCCTTGTTTTTCTTGAGGCAACGCAACACATATCAAACATGCTCCTCAGTTTTGTCATTAAAGCCCATGGCTAATTTTGATGATCCTGGTGGTCAGGCTAGCTCTTCCAATTGTTCAGCTTGCCACAACCAAGAATCTATATCTCAAAGTCATATAGCTGAAATTGTTGAAAGTTCTAGAAGAAAAGCCCGAACTATGGTTGTTCAAGCTACTCAGGCAATGTCAGTTTTTAGAAAGACAGAAAGTAAGGTTGAAAGAATTGAAGACGCAATAAATTTTATCAATAACCGGCTTTCAATTGATGACCCTACTGCTTCGGCCACAAATTTTCTGCCCACAGATTCTATTACTTTGGCTACTCAGGATCAATTGACTGCCAGCACATTAAATCCCTTGGAAAGTTGTCTTGCACAAGATGCTGAACTTAACAATTCATCCAACCAAAATGAAATGAAAATTCCCTCAGAACTCATATCCCATTGTCTAGCCACACTGCTCATGATTCAGAAGTGTACCGAAAGACAATTTCCCCCGGCTGATGTTGCTCAGGTTCTAGATTCTGCTGTCGCCAGTTTGCAGCCATTTTGTTCAAAGAATCTTCCAATATATGGTGAGATACAGAAATGCATGGGTATCATAAGAAATCAGATATTAGCACTCGTACCTACCTAG 3531 0.3993 MAPSRKSRSVNKKFSNIREAASSKDKDAANASKNRQKASAGIQKKRKLTDMLGPQWSKEELEQFYEAYRKFGKDWKKVALAVRSRSMEMVEALYTVNRAYLSLPEGTASVVGLIAMMTDHYSVLGGSDSGKESNEDAEISKKSQKRLRRKHLNDNKALDGHVSDHSQSHSVASGDGCLSLLKKRHSGIKPHAVRKRTPRVPISYSIGRDNGEKFFSPARQGSKQMVDTNDVAHKIALALTEASQRGGSSKISGSPNKKNMPSPDLKNEKVRVKSEKAGAKFCSSDMDGDSSELSLGSTEGNNGEYSKKTIHQRSRENTGRGRNREKGVKHYGKNLEPEENSNKHLSDIKEASSGTDDGKNMRFIKSNFNTDFADAKNAGSSYKGSRKKSKKLLFEKDEGSAFDALKALADLSLMMPVTNPDTESSAQVKEGNHDVVGESKMERHNVFPRIDSTTSSKLGKVYSDNNGAAATEAEGAYQLNAGIRKRKQKSSTLKNDETHTAAHLSGSQKTKVTDEVKKSIVKGKRSSVCTAHSRQLKVVKSPGNMSSNTNDKGERDDSSFSPIKVLSTNQVSQVNRGRPRRKMEKPKPMIRRDLTVSGNIFSGHNKYSSEKVSYLSFVLKGMLINCLSSYQMRRWCTFEWFYSAIDYPWFSKKEFVEYLDHVGLGHVPRLTRIEWGVIRSSLGRPRRFSEQFLIEEKNKLNQYRESVRSHYAEVLAGTKEGLPTDLAQPLIVGQRVIAIHPKTREIHDGSILTVDHCRYRVQFDQPELGVEFVTDIDCMPLYPSENMPTSLIRNNITPENLNDPKLNGKLRQRKIAEHPILSPSENSDNLKGLYISPTMHGSRTSSKQGFYSGCKSQAKVVFSEFGSAQLASSSQPSLLEHVHSKDADILAISELARALDKKELVLSELKHMNDGVSESQKYGDSSVKDSEPFKRNYASVIKQLTEANEQVSSALFFLRQRNTYQTCSSVLSLKPMANFDDPGGQASSSNCSACHNQESISQSHIAEIVESSRRKARTMVVQATQAMSVFRKTESKVERIEDAINFINNRLSIDDPTASATNFLPTDSITLATQDQLTASTLNPLESCLAQDAELNNSSNQNEMKIPSELISHCLATLLMIQKCTERQFPPADVAQVLDSAVASLQPFCSKNLPIYGEIQKCMGIIRNQILALVPT. 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00300 1176 Coils Coil 1030 1050 - -
Seca11g00300 1176 MobiDBLite consensus disorder prediction 481 562 - -
Seca11g00300 1176 SMART DIRP_2 641 742 IPR033471 -
Seca11g00300 1176 MobiDBLite consensus disorder prediction 1 17 - -
Seca11g00300 1176 MobiDBLite consensus disorder prediction 242 261 - -
Seca11g00300 1176 MobiDBLite consensus disorder prediction 18 32 - -
Seca11g00300 1176 PANTHER LIN-9 1 1176 IPR010561 GO:0006351|GO:0017053
Seca11g00300 1176 Pfam Myb-like DNA-binding domain 55 90 IPR001005 -
Seca11g00300 1176 MobiDBLite consensus disorder prediction 1 46 - -
Seca11g00300 1176 MobiDBLite consensus disorder prediction 242 269 - -
Seca11g00300 1176 MobiDBLite consensus disorder prediction 526 549 - -
Seca11g00300 1176 Pfam DIRP 640 741 IPR033471 -
Seca11g00300 1176 MobiDBLite consensus disorder prediction 287 305 - -
Seca11g00300 1176 MobiDBLite consensus disorder prediction 126 146 - -
Seca11g00300 1176 CDD SANT 56 90 IPR001005 -
Seca11g00300 1176 ProSiteProfiles SANT domain profile. 51 88 IPR017884 -
Seca11g00300 1176 MobiDBLite consensus disorder prediction 306 345 - -
Seca11g00300 1176 SMART sant 52 100 IPR001005 -
Seca11g00300 1176 SUPERFAMILY Homeodomain-like 52 98 IPR009057 -
Seca11g00300 1176 MobiDBLite consensus disorder prediction 281 345 - -
Seca11g00300 1176 Gene3D - 2 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00300 Seca-Chr11 2996596 3014935 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca11g00300 DIRP 8.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00300 - - gmx:100781646 1873.6