Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00299 ATGAATTTGACAAGAACCTTGCCAACCCTAAAATCTTCTCCTCTTGTGATACTGAAACTGCAGCTCTACCTCTACCCATCAACATCATCCTTCTCCCTCGAATTTTACACCACCACCACCACCGCCTCCCATCCACACTCCTTTACGGTGTCCCACCTCGTCAACAATTGTGGCTTTTCCTCAAAAACCGCTTCCAATGCTTCCCGCAAGCTCCGTCTCGACAACTCTCAAAAGCTAGATGCAGTTATCGACTTCTTCAGAACAAACGGCTTCTCTGACTCTCAAATACGCGATGTCATGAGAAGAGAACCATGGCTGCTCTCATGCGACCTCGACAAGGCAGTGTTGCCCAAGTTTGAATTTTTACGTTCCAAAGGTGCTTCTACCTCTGAAATTGCTCTCATGGTGAGTAAGAGTCCTAGATTCCTGGGAAGAAGCTTGGAGAATCATATTATCCCTGCATATGAATTAGTAAAAGGGTTCATCCAATCTGATAAGCGAACCATTGCTTGTTTGGCTGATTCTGACCTGTTGAAGATTGTTGAGGAATTGAAGGAACTGGGTTTCGATTCTTCAACTTCACCTTTCAGCGTGGCATTGCTTGCCAAGGGATCTGTAAGCGAGACCAGCTGGGCTGAGAAAATTGACACCTTTAAGAGGTGGGGGTGGTCTGAACAACAAGTTCTTCAAGCATTTAAGAAGCAGCCTTATTGTATGTTGACGTCCATTGATAAAATTAATGCAGTGATGAGTTTTTGGGTTGATCAGTTAGGTTTGAACTCTTTGGACCTTGTCAAAGCTCCATCATTTTTTCAATGGAGTCTTGAGAAGAGGATTATTCCAAGGGCTTCAGTTGTGCAGTTTCTTGTCTCAAAAGGACTAAGAGAAAAGGGTGCAGGCATAACTACACCATTCACTCTTTCTGAGAAGTTGTTCCTGGAAAGGTTTGTGAAATGCTTTAAGGAGGATTCTTCTCATCTGTTAAAGATGTACCAGGAAAAAATGAATCTTGCAAATAGCAGGGAGAAGCCTTCACCAAGTGCATAA 1047 0.4346 MNLTRTLPTLKSSPLVILKLQLYLYPSTSSFSLEFYTTTTTASHPHSFTVSHLVNNCGFSSKTASNASRKLRLDNSQKLDAVIDFFRTNGFSDSQIRDVMRREPWLLSCDLDKAVLPKFEFLRSKGASTSEIALMVSKSPRFLGRSLENHIIPAYELVKGFIQSDKRTIACLADSDLLKIVEELKELGFDSSTSPFSVALLAKGSVSETSWAEKIDTFKRWGWSEQQVLQAFKKQPYCMLTSIDKINAVMSFWVDQLGLNSLDLVKAPSFFQWSLEKRIIPRASVVQFLVSKGLREKGAGITTPFTLSEKLFLERFVKCFKEDSSHLLKMYQEKMNLANSREKPSPSA. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00299 348 Gene3D Transcription termination factor 3, mitochondrial 49 330 IPR038538 -
Seca11g00299 348 FunFam Mitochondrial transcription termination factor-like 168 324 - -
Seca11g00299 348 Pfam mTERF 206 306 IPR003690 GO:0003690|GO:0006355
Seca11g00299 348 Pfam mTERF 83 173 IPR003690 GO:0003690|GO:0006355
Seca11g00299 348 PANTHER CGI-12 PROTEIN-RELATED 46 321 IPR003690 GO:0003690|GO:0006355
Seca11g00299 348 SMART mt_12 261 295 IPR003690 GO:0003690|GO:0006355
Seca11g00299 348 SMART mt_12 133 190 IPR003690 GO:0003690|GO:0006355
Seca11g00299 348 SMART mt_12 229 260 IPR003690 GO:0003690|GO:0006355
Seca11g00299 348 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00299 Seca-Chr11 2982092 2983260 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca11g00299 mTERF 8.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00299 K15032 - gmx:102667698 360.918