Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00298 ATGGAACGGTACGGCCGGGCCAGTGAAGGGTCGCAGTCTGATCCGTCGCCGGAATGGACCGTCGCCGGCGGAGAGACGGGCCTTGAAGAGTCGGTGTGGCAACTGGGATTGGTTGGTGGCGAATCGTACCCTCTTCGACCAGATGAGGCTGATTGTATCTACTATCTGAGAACGGGTTTTTGTGGTTATGGCTCACGGTGTCGGTTCAACCATCCACGTGACCGTGGCGCGGTTATTGGAGCTGCGAGGACTGGAGGGGGGTATCCAGAACGAGTAGGACAGCCAGTGTGCCAGTATTATATGAGGACGGGATCATGCAAATTTGGTGCATCATGCAAATACCATCATCCCAGGCAAGCTGCAGGCACTACTACCCCTGTCTCGCTAAATTATTATGGATATCCATTGCGAATGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAGTTTGGTGCTACTTGTAAATTCCATCATCCACAGCCTGCAGGCGCCCAAATTCTAGCATCATCACCAGTTCCCCCAGTTTCACCTGTGCCTGTGCCGGTACCTTCGCCAATTTATCCAACTGTACAGTCTCCATCTGGTCCTTCATCACAACAATATGGTGTACTTGTTGCAAGGCCACCTCTGCTACCTGGCTCAGTAGTCCAGGGCCCCTATGGGCCTGTAGTAGTGTCCCCTGCCATGGTCCCTTTTTCAGGCTGGGGTCCTTATCAGGTTGGTCCAGCATTTCTTGCACCTGCAACAAGTCCTGTGCTTCCTTCTAGTACTCCATCGAATGTTGGCTCAACTCAGCTTTATGGGATAAACCAGTTACCTTCATCGGCAACTGCCTATACTGGACCTTATCAACCTTCTGGTTCCTCAATGGGTCCTTCAGGCAGTAGCCAGAAGGAGCACTCATATCCAGAAAGGCCTGATCAACCAGAATGTCATTATTACATGAAAACAGGGGAATGTAAATTTGGTCCATCATGTAAATATCATCATCCACCAGATATGAGCGCACCAAAAGCGAATGTGATCCTTAGTCCTGTGGGTCTTCCTTTGCGCCCGGGGGCTCCAACTTGCACTCATTATACACAGCGTGGAGTTTGTAAGTTTGGTTCTGCATGCAAATTTGACCATCCTATGGGATCCCTGAGTTATAGCCCATCTGCTTCTTCCCTAGCTGATATGCCTGTTGCACCCTATCCTGTGGGTTCCTCAATTGGTACTCTTGCCCCATCATCTTCATCATCAGAGTTGCGGCCTGAACTTGCCTCAGGATCTACCAAGGAATCTGTTTCGTCCAGAGTGCCTCCATCAATGAGCACATCGACTGGATCAGTTGGCTTGACCTTGTCAACTGCTGGACCCATTTCTCAATTAAGCACCCAACCATCTGCTCAGAGTTCCAGTTCTTTAGCATCTACCAATGCCACAACAAGTAGCACTGTCTCTCACACCTCAAGCTAA 1470 0.4993 MERYGRASEGSQSDPSPEWTVAGGETGLEESVWQLGLVGGESYPLRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAVIGAARTGGGYPERVGQPVCQYYMRTGSCKFGASCKYHHPRQAAGTTTPVSLNYYGYPLRMGEKECSYYVKTGQCKFGATCKFHHPQPAGAQILASSPVPPVSPVPVPVPSPIYPTVQSPSGPSSQQYGVLVARPPLLPGSVVQGPYGPVVVSPAMVPFSGWGPYQVGPAFLAPATSPVLPSSTPSNVGSTQLYGINQLPSSATAYTGPYQPSGSSMGPSGSSQKEHSYPERPDQPECHYYMKTGECKFGPSCKYHHPPDMSAPKANVILSPVGLPLRPGAPTCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELASGSTKESVSSRVPPSMSTSTGSVGLTLSTAGPISQLSTQPSAQSSSSLASTNATTSSTVSHTSS. 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00298 489 ProSiteProfiles Zinc finger C3H1-type profile. 309 337 IPR000571 GO:0046872
Seca11g00298 489 MobiDBLite consensus disorder prediction 282 303 - -
Seca11g00298 489 MobiDBLite consensus disorder prediction 411 489 - -
Seca11g00298 489 PANTHER PROTEIN PHOSPHATASE RELATED 38 417 - -
Seca11g00298 489 FunFam CCCH type zinc finger protein 307 392 - -
Seca11g00298 489 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Seca11g00298 489 SUPERFAMILY CCCH zinc finger 359 385 IPR036855 GO:0046872
Seca11g00298 489 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 311 336 IPR000571 GO:0046872
Seca11g00298 489 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Seca11g00298 489 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 359 382 IPR000571 GO:0046872
Seca11g00298 489 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Seca11g00298 489 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 164 IPR000571 GO:0046872
Seca11g00298 489 Gene3D - 46 124 - -
Seca11g00298 489 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Seca11g00298 489 Gene3D - 125 173 - -
Seca11g00298 489 SUPERFAMILY CCCH zinc finger 137 165 IPR036855 GO:0046872
Seca11g00298 489 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Seca11g00298 489 SMART c3hfinal6 309 336 IPR000571 GO:0046872
Seca11g00298 489 SMART c3hfinal6 355 382 IPR000571 GO:0046872
Seca11g00298 489 SMART c3hfinal6 139 164 IPR000571 GO:0046872
Seca11g00298 489 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Seca11g00298 489 SUPERFAMILY CCCH zinc finger 312 337 IPR036855 GO:0046872
Seca11g00298 489 MobiDBLite consensus disorder prediction 282 312 - -
Seca11g00298 489 ProSiteProfiles Zinc finger C3H1-type profile. 355 383 IPR000571 GO:0046872
Seca11g00298 489 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Seca11g00298 489 MobiDBLite consensus disorder prediction 1 23 - -
Seca11g00298 489 FunFam Zinc finger nuclease 2 45 122 - -
Seca11g00298 489 SUPERFAMILY CCCH zinc finger 94 119 IPR036855 GO:0046872
Seca11g00298 489 Gene3D - 298 386 - -
Seca11g00298 489 SUPERFAMILY CCCH zinc finger 49 74 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00298 Seca-Chr11 2951629 2956445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00298 1 457 C2H2 Transcription Factor Family AT5G18550 55.932 6.57e-156 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca11g00298 zf-CCCH 6.8e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00298 - - gmx:100789405 756.518