Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00296 ATGTCAACCTCTAGAACCTCAGATACATCATCCTTCAAAGGATATCATGAACCAAATCAAACCCAAATGTGTCTATCTCTTCTTCAACGTAACACATCTCCTTCAGGTGAGAGGAGAGGCAGAAGGAAGCAAGCAGAACCAGGGAGGTTTCTTGGGGTTAGGAGGCGCCCTTGGGGTCGATATGCTGCCGAAATTAGAGACCCTACAACTAAAGAAAGGCATTGGCTTGGCACATTTGACACTGCTCAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGAAGCCAAGCAAGAACCAACTTCATTTACTCTGACAATATCAATTTTCACACTCTTCTTTCTCCTATGGATGTTCAATCTCTCTTGCCAGCTTCACAGTTCCTCACTAACACTCATCAGACCAAACAACCAACCAATCAAAATAGCCTCCCTCATCAGATTGATACTTCCCACAGTGGAAACCCCTCCCCATTGTGTGCTGAAATCAGCACTACATATGGATCAGCTCAGGATGATAATTTCTTTTTTTCCAATGATTCTAACTCAGGCTATCTGGAATGTATAGTTCCTGATAATTGTTTCAGACCTGCTTCTAGTAACAACAGTTCAAACTCCAGAAAGACCAATGTGAGTGCTTCAAGTGATCAAAAGGTTAGCTCAGTTAACACAATGTCCATGGAGAGTCATCAGTCCTATGTTGACATGACTTCATTCTCTGAAGAAGTCATAAAAATGCCACCAAGGGCCTCTAACTTTTCAGAGTATTGTTATTCAAATGAACTCAGTCAAGGATTCTGGGATGATCATGATCAGCAATCATGGGATTGGAATTCCAGTGAACTTTCAGCTATATTTAACAATCCATTAAGGGTTGAAGATGAATGCATGGATAAGTTGTATCCCATCAATGACAATCCAAGCTATGGTCTAATGAATGAGGCTGCTTCTTCAACAACATGTTCTCCTTCAGTTCCACCCTTTGGGGAAGTAGACTTGGGATACCCACTTTTCTGA 1026 0.4191 MSTSRTSDTSSFKGYHEPNQTQMCLSLLQRNTSPSGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFIYSDNINFHTLLSPMDVQSLLPASQFLTNTHQTKQPTNQNSLPHQIDTSHSGNPSPLCAEISTTYGSAQDDNFFFSNDSNSGYLECIVPDNCFRPASSNNSSNSRKTNVSASSDQKVSSVNTMSMESHQSYVDMTSFSEEVIKMPPRASNFSEYCYSNELSQGFWDDHDQQSWDWNSSELSAIFNNPLRVEDECMDKLYPINDNPSYGLMNEAASSTTCSPSVPPFGEVDLGYPLF. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00296 341 SUPERFAMILY DNA-binding domain 50 107 IPR016177 GO:0003677
Seca11g00296 341 MobiDBLite consensus disorder prediction 137 165 - -
Seca11g00296 341 MobiDBLite consensus disorder prediction 1 20 - -
Seca11g00296 341 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 35 236 - -
Seca11g00296 341 CDD AP2 49 105 IPR001471 GO:0003700|GO:0006355
Seca11g00296 341 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Seca11g00296 341 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Seca11g00296 341 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Seca11g00296 341 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Seca11g00296 341 MobiDBLite consensus disorder prediction 202 224 - -
Seca11g00296 341 Pfam AP2 domain 52 98 IPR001471 GO:0003700|GO:0006355
Seca11g00296 341 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Seca11g00296 341 FunFam Ethylene-responsive transcription factor 2 49 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00296 Seca-Chr11 2945606 2946631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00296 1 200 AP2-EREBP Transcription Factor Family AT5G18560 51.406 1.23e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca11g00296 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00296 - - gmx:100812047 490.345