Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00284 ATGGAAGGCTACAGTGACGACTCTGCTATGCCAATGCCACCACTCTCTCAAATCCCACCTTCAACCATTGCTGAAATGGGTAACAAACCCTCCAGAAAGCGTGATCCAAAATTGGGTGCTCCCAATGCAGAGATCCTTAAGATGGAACGTGATCGAAGGTTGAAGATGGCTCAAATGTTCACTCAGCTTCGGAACTCTGTCCCCGGTGTCTTTCCTCAGGCTACGAGGGAAGTGATTGTAAACGAAACAATTCGTTACATTAAGGACCTTGAGAAGAAGAAGCAAGAGTTGGAGGAGCTCAAGGAGTCAATGAAATCAATAGAAGAGAGGTTGATGCTTCCTTGTGCTAACAGGAATTGCTCCATCACGGTTTCTGTGTCTAGCAATGTTGCCTTCTTTGGAATTCAATCGGTTGCTCAACCTGGTTTAATCACAGTAATTTTGAAGGTGTTCTCTAAGCACCAAGCTGAGATTTTGGCTGCAAATGTCTCAGTTAATCATGGCAAGTTGATATTAGCAATCACAGCGTTAGTGCAAAATGGTGATGGAAATAGTGCCATTGAAAAGATCAAAAGAGAAATTACTAGTTTGTAG 594 0.431 MEGYSDDSAMPMPPLSQIPPSTIAEMGNKPSRKRDPKLGAPNAEILKMERDRRLKMAQMFTQLRNSVPGVFPQATREVIVNETIRYIKDLEKKKQELEELKESMKSIEERLMLPCANRNCSITVSVSSNVAFFGIQSVAQPGLITVILKVFSKHQAEILAANVSVNHGKLILAITALVQNGDGNSAIEKIKREITSL. 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00284 197 Coils Coil 197 197 - -
Seca11g00284 197 Pfam Helix-loop-helix DNA-binding domain 47 91 IPR011598 GO:0046983
Seca11g00284 197 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 105 IPR036638 GO:0046983
Seca11g00284 197 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 40 90 IPR011598 GO:0046983
Seca11g00284 197 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 48 178 IPR044278 GO:0003700|GO:0006355|GO:0009960
Seca11g00284 197 ProSiteProfiles ACT domain profile. 132 197 IPR002912 -
Seca11g00284 197 Gene3D - 43 116 IPR036638 GO:0046983
Seca11g00284 197 SMART finulus 46 96 IPR011598 GO:0046983
Seca11g00284 197 Coils Coil 80 110 - -
Seca11g00284 197 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00284 Seca-Chr11 2854271 2855362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00284 9 98 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 34.409 1.47e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g00284 HLH 0.00014 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00284 - - gmx:102670256 215.312