Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00278 ATGACCTCTGATCACGCATCAGTAGTGTCAATGAACCTGTTCGTTGCTCTTCTCTGCACTTGCATCATCATTGGTCATTTGTTGGAGGAGAATCGATGGATTAATGAATCCATCACTGCCCTTCTCATTGGTCTCTGTACTGGGGTTTTTATATTGCTTACCACTGGAGGAAAAAGCTCTCATATTTTGCTTTTCAGCGAAGATCTTTTCTTTATTTACCTTCTTCCTCCCATTATTTTCAATGCCGGGTTTCAGGTCAAGAAGAAACAATTTTTCCGCAATTTTATGACTATCATGCTCTTTGGTGCAATTGGTACTTTGATATCATTCTGCATCATATCTCTAGGTGCCATCCACTTTTTCCAGATATTAGATATTGGTTCCCTCAAGATTGGAGATTATCTAGCAATTGGAGCAATATTTTCAGCAACAGATTCTGTTTGCACATTGCAGGTTCTTAATCAGGATGAGACACCTTTACTATACAGCCTGGTGTTTGGGGAAGGGGTAGTAAATGATGCTACCTCTGTAGTACTCTTCAAAGCAATTCAGAATTTTGACCTCTCCCACATTGACTTAATCACTGCTTTGCAGTTAGTAGGAAATTTTTTATATTTATTCATCGCAAGCACTGTGCTGGGAATCTTAGCTGGATTGCTTAGCGCATTCATTATTAAAAAGCTCTATTTTGGCAAGTTGATAAGGCATTCTACAGACCGTGAGGTTGCTCTCATGATACTCATGGCTTACCTTTCATATATGCTAGCTGAACTATTTTCCTTAAGTGCCATTCTAACTGTGTTCTTCAGTGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACTGAAAGTTCAAGAGTGACAACCAAGCATGCTTTTGCCACGTTGTCATTCATTGCTGAGATCTTTATCTTCCTTTATGTTGGGATGGATGTACTAGATATGGAGAAGTGGCGATTTGTAAGTCAAAGCCCAAGAAAATCAATCGGGGTCAGTTCGTTGTTGTTGGCACTTATCCTAGTGGGAAGAGCTGCATTTGTTTTCCCTCTGTCATTCTTATCCAACTTGTCCAAGAAGTCTCAATCCGAGAAAATTGAGTTAAAGCAACAAGTAACAATTTGGTGGGCTGGTCTCATGCGTGGAGCTGTTTCAATAGCACTTGCTTACAATCAGTTTACCAGGCTTGGCCACACCAAATTGCGTGAGAATGCCATCATGATCACTAGCACCATCACTGTTGTACTCTTCAGCACAGTGGTGTTTGGGTTAATGACGAAGCCACTTGTGAGGTTATTGCTTCCTTCCTCCAAACAAATAATCAGCATACCGTCCCCACCATTGACCCCTAAATCATTCACTGTGCCACTTCTTGGCAATGGACAAGATTCAGGGGTCAATGCTGGCACCCAAAATGGCCTTCGACCAAGCAGATTGCGTATGCTCCTAAGCATTCCTGATCGTGGGGTACACCATTATTGGCGCAAATTTGATGATTCAGTCATGCGACCTATCTTTGGTGGGCGGGGTTTTGTACCTTACGTTCCTGGTTCACCCCTTGAACAAAGTGTTCATCAGTGGCATTAA 1587 0.4184 MTSDHASVVSMNLFVALLCTCIIIGHLLEENRWINESITALLIGLCTGVFILLTTGGKSSHILLFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAIGTLISFCIISLGAIHFFQILDIGSLKIGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFKAIQNFDLSHIDLITALQLVGNFLYLFIASTVLGILAGLLSAFIIKKLYFGKLIRHSTDREVALMILMAYLSYMLAELFSLSAILTVFFSGIVMSHYTWHNVTESSRVTTKHAFATLSFIAEIFIFLYVGMDVLDMEKWRFVSQSPRKSIGVSSLLLALILVGRAAFVFPLSFLSNLSKKSQSEKIELKQQVTIWWAGLMRGAVSIALAYNQFTRLGHTKLRENAIMITSTITVVLFSTVVFGLMTKPLVRLLLPSSKQIISIPSPPLTPKSFTVPLLGNGQDSGVNAGTQNGLRPSRLRMLLSIPDRGVHHYWRKFDDSVMRPIFGGRGFVPYVPGSPLEQSVHQWH. 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00278 528 Pfam Sodium/hydrogen exchanger family 15 431 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Seca11g00278 528 PANTHER SODIUM/HYDROGEN EXCHANGER 3 506 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Seca11g00278 528 Gene3D - 130 182 - -
Seca11g00278 528 PRINTS Na+/H+ exchanger signature 69 80 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca11g00278 528 PRINTS Na+/H+ exchanger signature 98 106 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca11g00278 528 PRINTS Na+/H+ exchanger signature 138 148 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca11g00278 528 PRINTS Na+/H+ exchanger signature 83 97 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00278 Seca-Chr11 2795728 2799611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00278 2 526 Antiporters AT3G05030 74.528 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00278 - - ccaj:109808409 956.051