Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00267 ATGGGAAGGTATCGAAGCCGAAGCCGAAGCTACAGCCCTCGACGGCGTAGCAGAACCCCACCGCGCGGACGCAAGCGCTACGATGATGATCGCGGTGACAGCAGGTCACACAGAGACCGACGCTCACCTCTTCCTTCTGGCTTGCTTGTTCGTAATCTCCCCCTTGATGCTAGGCCTGAAGATCTTAGGACCCCATTCGAACGCTATGGTCCTGTGAAGGATGTATATCTTCCTAGAAACTACTACACTGGTGAGCCTCGGGGCTTTGGATTTGTGAAGTATCGATATGGTGAAGATGCAGCTGAGGCAAAACAACAGCTTAATCATACTATCATTGGTGGACGTGAAATAAGAATTGTGTTTGCTGAGGAAAATAGGAAAACTCCTCAAGAGATGCGCCTTAGTTCTCGTTCAAGAAGTGGTCGACAAGGAGGTGGTAGAAGGAGGGCTAGGACAAGGTCCCCAAGACGCAGATATCGATCCTACTCTAGGTCTCCATCACCAGCCAGAGATGATTCAAGATAA 525 0.501 MGRYRSRSRSYSPRRRSRTPPRGRKRYDDDRGDSRSHRDRRSPLPSGLLVRNLPLDARPEDLRTPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRYGEDAAEAKQQLNHTIIGGREIRIVFAEENRKTPQEMRLSSRSRSGRQGGGRRRARTRSPRRRYRSYSRSPSPARDDSR. 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00267 174 MobiDBLite consensus disorder prediction 1 52 - -
Seca11g00267 174 MobiDBLite consensus disorder prediction 22 44 - -
Seca11g00267 174 SMART rrm1_1 47 120 IPR000504 GO:0003723
Seca11g00267 174 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 47 168 - -
Seca11g00267 174 SMART rrm2_1 47 120 IPR003954 GO:0003676
Seca11g00267 174 MobiDBLite consensus disorder prediction 124 174 - -
Seca11g00267 174 SUPERFAMILY RNA-binding domain, RBD 48 151 IPR035979 GO:0003676
Seca11g00267 174 MobiDBLite consensus disorder prediction 1 21 - -
Seca11g00267 174 Gene3D - 2 135 IPR012677 -
Seca11g00267 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 118 IPR000504 GO:0003723
Seca11g00267 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 124 IPR000504 GO:0003723
Seca11g00267 174 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 138 - -
Seca11g00267 174 MobiDBLite consensus disorder prediction 142 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00267 Seca-Chr11 2705063 2707405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00267 38 133 Eukaryotic Initiation Factors Gene Family AT1G22760 28.571 1.50e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00267 K12900 - gmx:100788749 196.052