Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00254 ATGGGCTGTGTCCATGGCAAGTGTTGCTGCGGCAATTCTTCATCAGATGATGGCTCTAGGAACTACCGAGAAATTGGCTTCCGTAGGAAGAACGTAATTGCTCAGAGATCACTGAAGCATGTTGCTGTTCCTTCCCACAACTTCATTTTGGAATACACTTTTCTCACACAGCGGGGATACTACCCTGACTCACCGGATAAAGAAAACCAAGATAGTTTCTGCATTAGGACACAAGTCCAAGGTAACCCCAGTATCCATTTCTTCGGTGTCTATGATGGGCATGGTCAATTTGGTAGCCAGTGTTCCAACTTTGTTAAGGATAGGTTGGTAGAAAAATTATCAAACGACCCTGCATTGGTGGAGGACCCTGTCCAGGCTTACTCTTCTGCATTCTTGACAACAAATCAAGAATTGCATAGTAGTGAGATTGATGATTCTATGAGTGGCACTACCGCAATTACGGTGCTTGTTATTGGAGACACCCTATATGTTGCTAATGTTGGTGATTCAAGAGCTGTGCTAGCTGTTAAGGATGGTAATCGCATCGTTGCTGAGGACTTGTCCTCTGATCAGACACCATTTCGGAGAGATGAATATGAGAGAGTGAAACTTTGTGGGGCAAGGGTGTTGAGTGTTGATCAAGTGGAAGGGATCAGGGATCCAAATATCCAGCATTGGGGTGATGAAGAGAGTCGGGGCGGTGATCCTCCAAGATTGTGGGTTCCAAATGGGATGTATCCTGGAACAGCATTTACAAGGAGTATAGGGGACAGTTTGGCGGAGACTATTGGTGTCGTTGCTATCCCAGAGGTGTCAACGGTTAAGCTGACACCTAATCATCTTTTTTTTGTTGTTGCAAGTGATGGCATATTTGAATTCCTCTCAAGCCAAACTGTTGTTGATATGGCCTCAGGCTATACCGATCCTGGCGATGCATGTGAAGCTATTGCTGAAGAGTCATATAAACTATGGTTGGAACTTGAGAACCGAACAGATGATATAACAATCATCATTGTTCAGATCAAAGGCCTCACTAGTGTATGGATTGTTGAATATATTCCTTTTGTGTCTTTTGTTTTTTATGTTTCCATGATTCAAGCTTGTTTAAAGATTCTAAGTTTGTAA 1125 0.4311 MGCVHGKCCCGNSSSDDGSRNYREIGFRRKNVIAQRSLKHVAVPSHNFILEYTFLTQRGYYPDSPDKENQDSFCIRTQVQGNPSIHFFGVYDGHGQFGSQCSNFVKDRLVEKLSNDPALVEDPVQAYSSAFLTTNQELHSSEIDDSMSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRIVAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGIRDPNIQHWGDEESRGGDPPRLWVPNGMYPGTAFTRSIGDSLAETIGVVAIPEVSTVKLTPNHLFFVVASDGIFEFLSSQTVVDMASGYTDPGDACEAIAEESYKLWLELENRTDDITIIIVQIKGLTSVWIVEYIPFVSFVFYVSMIQACLKILSL. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00254 374 CDD PP2Cc 67 341 IPR001932 -
Seca11g00254 374 ProSitePatterns PPM-type phosphatase domain signature. 87 95 IPR000222 GO:0043169
Seca11g00254 374 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 46 343 - -
Seca11g00254 374 SMART PP2C_4 47 339 IPR001932 -
Seca11g00254 374 SUPERFAMILY PP2C-like 42 343 IPR036457 -
Seca11g00254 374 Pfam Protein phosphatase 2C 74 319 IPR001932 -
Seca11g00254 374 ProSiteProfiles PPM-type phosphatase domain profile. 51 341 IPR001932 -
Seca11g00254 374 PANTHER PROTEIN PHOSPHATASE 69 340 IPR015655 GO:0004722|GO:0006470
Seca11g00254 374 Gene3D - 47 343 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00254 Seca-Chr11 2573407 2576540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00254 1 346 PP2C-type Phosphatase Gene Family AT3G06270 69.914 2.51e-179 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00254 - - gmx:100797866 625.165