Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00248 ATGGCTTCCCCTACACACTCCACACCTCCTCCTCCAGATCCACCCTCTGCGGTTCCCCTTGCCCTCCCTGTCCCAATCCCAGTCCCACCTTCCTCTCGCCGCCTTCCTCCGCCCTGTTGGTCCCCCGATGAAACCCTCGCCCTCATCGACGCTTACCGCGAAAAGTGGTACTCCCTTGGCCGCGGAAACCTCAAGGCCACCCACTGGCAAGAGGTGGCTGACTCCGTCGCTCAGCGTTGCCCCAACGCTTCCCCTCCCAAAACCCCCGTCCAGTGCCGCCACAAGATGGAGAAGCTCCGCAAACGCTACCGCACCGAGATCCAACGTGCTCGTTCTCTCCCTGTCTCCCGATTCACCTCCTCCTGGGTCCACTTCAAGCTCATGGATTCCATGGAGAAAGGCCCTTCCCCTCCCAAACCCGAAAACGATTCCGATAGCCCCCACGACGTCGACGAAGACGACGACGAAGATCAAGAGTTGTACGAGGAGATCAAGAACGGCCATGGATCTAACACCAGGAGCTTGAACAAATTGTACAAAAACGGGTTTGGTGGTGGCGGGTTTAGGATTAGGATTCCGACCGGGTTGAACGCGGCGCAACCTGGGTCGAAGTTATTTGGGAAGGTTGGTAATCAGAAATACAACCCTAACCTGAATTACAACCCTAGCTCTGATGACTATGAGACGAAGGTGTTGGGGAAGAAGAGGGAGAGAGACCCCGTGGGAGAGGTGGTGTCTGCGATTAAGGTTTTGGGTGATGGGTTTGTGCGGATGGAGCAGATGAAGATGGAGATGGCGAGGGAGATTGAGACCATGCGGATGGAGATGGAAATGAAGCGCACTGAGATGATTCTGGAGTCTCAACAGCGAATTGTGGAGGCCTTTGCCAAGGCCGTTTCGGACAAGAAGAAGGCTAAGAGAATTCTCTCACCCCAACAACCTTAA 945 0.5545 MASPTHSTPPPPDPPSAVPLALPVPIPVPPSSRRLPPPCWSPDETLALIDAYREKWYSLGRGNLKATHWQEVADSVAQRCPNASPPKTPVQCRHKMEKLRKRYRTEIQRARSLPVSRFTSSWVHFKLMDSMEKGPSPPKPENDSDSPHDVDEDDDEDQELYEEIKNGHGSNTRSLNKLYKNGFGGGGFRIRIPTGLNAAQPGSKLFGKVGNQKYNPNLNYNPSSDDYETKVLGKKRERDPVGEVVSAIKVLGDGFVRMEQMKMEMAREIETMRMEMEMKRTEMILESQQRIVEAFAKAVSDKKKAKRILSPQQP. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00248 314 MobiDBLite consensus disorder prediction 1 37 - -
Seca11g00248 314 Coils Coil 93 113 - -
Seca11g00248 314 Gene3D - 40 105 - -
Seca11g00248 314 ProSiteProfiles Myb-like domain profile. 40 100 IPR001005 -
Seca11g00248 314 MobiDBLite consensus disorder prediction 129 158 - -
Seca11g00248 314 FunFam Trihelix transcription factor ASIL2 40 105 - -
Seca11g00248 314 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 16 301 IPR044823 -
Seca11g00248 314 SMART 118neu2 47 136 IPR006578 -
Seca11g00248 314 Pfam Myb/SANT-like DNA-binding domain 38 131 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00248 Seca-Chr11 2524353 2525297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00248 4 131 Trihelix Transcription Factor Family AT3G14180 34.043 1.02e-17 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca11g00248 Myb_DNA-bind_4 3.1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00248 - - vun:114179736 412.92