Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00224 ATGAATATTTTTTCGGTATCATCCTCCGCTGCCTGCAAGCCCCTAGTGAGTAATTTCCAACCGGCACTCACCACCATGGATTCCTTGTTTCACCACCGTAAGGAAAAAGTGGTTGTGATATTGGGCGCCACTGGCACCGGGAAGTCGAAACTGGCTATAGACTTAGCCACCCATTTCCCACCGGGTGAGGTTATCAACTCTGACAAAATGCAAGTTTACAAAGGCCTTGACATCACAACTAACAAGGTAACCCAACAAGAGTGTCGTGGGGTCCCACATCATCTGCTTGGAATGATTGATCCTAATTCCAATTTCACTGCCAACGACTTTTGTCACCACGCTTCTCTCACAATTGCTTCCATCCTTGGAAGGGATGGCTTACCCATCATTGCTGGTGGGTCCAATTCCTTCATCGATGCTTTGGTCAACCACCACCCTGAGTTTCGCTTAAGGTACCACTGCTGCTTCCTCTGGGTTGATGTTTCCCTTCCTGTGCTCCATTCCTCTCTGTCTTCGCGCGTGGATCGCATGATTGAGGCTGGTCAAGTGGATGAGGTTCGTGAGTTTTTTGACCCGAAAGAGGACTACACGAGAGGGATAAGAAGGGCCATTGGGGTCCCTGAATTTGATGAGTTTCTGAGAGCAGAGGCCAGAGGAGCAGATGAAAGAACCAAGAAGAGGCTCCTTGAGCCTGCCATTGCAAACATCAAAATCAATAACTGCAAGCTCGCGAACCGTCAGCTCCAGAAGATTCGTCGTCTTTACAACATTTGGAAACGGAATAATTATGTGCATCGTCTTGATGCAACAGAGGTGTTCCTCAAGACTAACCCTGAGGAAGCAGAGGAGGCTTGGGAGGATCATGTCTTGGCCAAGGGCCGTAGGATCCTCCATAAGTTTCTTTACGAGGAAACACACGGTTTTGTGTCACCCAAGGCCGTGATTTCTCCGGCGCCGCCGTCAGCCATGGCAGCGGTAACCCATTAG 987 0.4944 MNIFSVSSSAACKPLVSNFQPALTTMDSLFHHRKEKVVVILGATGTGKSKLAIDLATHFPPGEVINSDKMQVYKGLDITTNKVTQQECRGVPHHLLGMIDPNSNFTANDFCHHASLTIASILGRDGLPIIAGGSNSFIDALVNHHPEFRLRYHCCFLWVDVSLPVLHSSLSSRVDRMIEAGQVDEVREFFDPKEDYTRGIRRAIGVPEFDEFLRAEARGADERTKKRLLEPAIANIKINNCKLANRQLQKIRRLYNIWKRNNYVHRLDATEVFLKTNPEEAEEAWEDHVLAKGRRILHKFLYEETHGFVSPKAVISPAPPSAMAAVTH. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00224 328 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 34 300 IPR039657 -
Seca11g00224 328 FunFam Adenylate isopentenyltransferase 5, chloroplastic 163 262 - -
Seca11g00224 328 Pfam IPP transferase 150 253 - -
Seca11g00224 328 Pfam IPP transferase 71 145 - -
Seca11g00224 328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 194 IPR027417 -
Seca11g00224 328 Gene3D - 34 301 IPR027417 -
Seca11g00224 328 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 163 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00224 Seca-Chr11 2252757 2254502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00224 151 313 C2H2 Transcription Factor Family AT2G27760 30.688 5.30e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00224 K10760 - gmx:100778430 458.373