Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00219 ATGGGTGTTTCATGGAGCAGTAACGGTAACGGTAACACTAACAGAAGAAGAAACGGTTACTTTCAGCATCCACCTCCTCATCTCCCACCCCCTTACTATTACTCTCATCCTCCTCCACCGCCGTCACTGCTGCCACCGCCACCGCCTCAAGGTTACTATTTTACCTCAACTAACCCTTCTACTGCTAACTACGTGACACCTCCTCCTCCTCCTCATACTCAGTATTACTCAAATGGTTACACTGCCAATTCCATGCTCCGTCCCCTTCATCCCCAACCCTTTTATGCAAATCCGGGTCCGGGTCAGGGTCAACCCGGGGTTACTCCTCCACCCTATGTTGACCATCAAACCGCTAAGAAGATAAGGAATGATGTCAATTTGCATAAACATACTCTGCGCCTCGACGTTGATCCTAACAATCCTGATCACCACTTGATTTCCTTCGATTTTGATGCCCTCTATGATGGCAGCATTACAATCTTCTACTTAGCAAAAGAAGAAGAAAATTGTAAGTTTATTCCACTATTGCCCGAAGCATTTGAGCCAATCACATTCCCCTTTCAGAAAGGAGTTGGTCAGAAATTTTATCAGCCTTCAGGAACGGGCATTGACCTGGGTTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCACCTGAAGAAGATGTGTTTCCCCTCGTAATATGTGCTGAAACAAATTCGACAACTCCTTTGGCAGATGAAACTCCCGGTAATTCTGTACTAGACGCATCCCCTCACATGCAAATAACTCAAGCTGTTTTAGAGAAAAGCAATGGCAGTGGTCCTTTTCAAGTAAAAGTAGTTAGGCAGATTCTGTGGATTGATAATGTTCGTTATGAGCTGAGAGAGTTATATGGAATAGGAAGTTCAACAGCAGCAGATTTTGATGATAGTGATCCTGGGAAGGAGTGTGTGATATGCATGACTGAACCCAAGGACACTGCTGTCTTACCTTGCCGACATATGTGTATGTGTAGTGAGTGTGCAAAAGCATTGCGGTTACAATCAAATAAATGCCCTATATGCCGTCAGCCCATTGAGGAACTTATAGAGATCAAGATAAACAATGACAACCAATGA 1098 0.4426 MGVSWSSNGNGNTNRRRNGYFQHPPPHLPPPYYYSHPPPPPSLLPPPPPQGYYFTSTNPSTANYVTPPPPPHTQYYSNGYTANSMLRPLHPQPFYANPGPGQGQPGVTPPPYVDHQTAKKIRNDVNLHKHTLRLDVDPNNPDHHLISFDFDALYDGSITIFYLAKEEENCKFIPLLPEAFEPITFPFQKGVGQKFYQPSGTGIDLGFFELDDLSKPSPEEDVFPLVICAETNSTTPLADETPGNSVLDASPHMQITQAVLEKSNGSGPFQVKVVRQILWIDNVRYELRELYGIGSSTAADFDDSDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQPIEELIEIKINNDNQ. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00219 365 ProSiteProfiles Zinc finger RING-type profile. 310 349 IPR001841 -
Seca11g00219 365 MobiDBLite consensus disorder prediction 1 111 - -
Seca11g00219 365 SMART ring_2 310 348 IPR001841 -
Seca11g00219 365 MobiDBLite consensus disorder prediction 23 53 - -
Seca11g00219 365 FunFam probable E3 ubiquitin-protein ligase LOG2 294 359 - -
Seca11g00219 365 Pfam Zinc finger, C3HC4 type (RING finger) 308 354 - -
Seca11g00219 365 SUPERFAMILY RING/U-box 309 355 - -
Seca11g00219 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 359 IPR013083 -
Seca11g00219 365 PANTHER MAHOGUNIN 52 359 IPR045194 GO:0061630
Seca11g00219 365 MobiDBLite consensus disorder prediction 1 19 - -
Seca11g00219 365 CDD mRING-HC-C3HC5_MGRN1-like 308 349 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00219 Seca-Chr11 2206985 2209300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00219 90 365 C3H Transcription Factor Family AT3G06140 58.904 9.23e-111 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00219 - - gmx:102665712 508.064