Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00211 ATGGCCGCCACCTCAGCAGCCATGGATCAATTTGACGAATCCATGAAGAAACAAATGTCATCACTTTTGCGGGCTATGTTTGTAGTTAAATCCCTCAAAGAGGACAATACTCCTTGCGAAATTGACGAGGGTCTCTTTTTGGGTTCCGTTGGCACTGCGGCTAACAAGGATGGTTTGAAAAACGTGAATGTCACTCACATTTTGACTGTGGCTGGTAAATTGACACCTGCGCATCCTGGGGATTTCGTCTATAAAACTATAGATGTTGTTGACAGAGATGATGCCAACTTAAAACAATACTTCAACGAATGTTTTGATTTTATTGATGAAGCCAAAAGACATGGTGGACGGGTTCTGGTTCATTGTTATGCTGGAAAATCAAGGAGTGTGACTATTGTAGTGGCATATCTGATGAAGACTCGTGGAATGAGCTTATCTGAAGCTCTGCAGCATGTAAAGAGCAAACGGCCACAAGCAGCTCCCAATCCTGGTTTCATTCGTCAACTGGAGGAGTTTGAAAAATCTCTTCAAGGTGCGTCTGAATTGCATTAG 552 0.4293 MAATSAAMDQFDESMKKQMSSLLRAMFVVKSLKEDNTPCEIDEGLFLGSVGTAANKDGLKNVNVTHILTVAGKLTPAHPGDFVYKTIDVVDRDDANLKQYFNECFDFIDEAKRHGGRVLVHCYAGKSRSVTIVVAYLMKTRGMSLSEALQHVKSKRPQAAPNPGFIRQLEEFEKSLQGASELH. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00211 183 Gene3D Protein tyrosine phosphatase superfamily 29 182 IPR029021 -
Seca11g00211 183 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 99 157 IPR000387 GO:0016311|GO:0016791
Seca11g00211 183 ProSiteProfiles Dual specificity protein phosphatase domain profile. 37 178 IPR020422 GO:0006470|GO:0008138
Seca11g00211 183 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 36 180 IPR029021 -
Seca11g00211 183 Pfam Dual specificity phosphatase, catalytic domain 45 174 IPR000340 GO:0008138|GO:0016311
Seca11g00211 183 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 33 176 - -
Seca11g00211 183 SMART dsp_5 37 175 IPR020422 GO:0006470|GO:0008138
Seca11g00211 183 CDD DSP 38 171 - -
Seca11g00211 183 FunFam Dual specificity phosphatase 12 39 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00211 Seca-Chr11 2114169 2118137 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00211 40 178 Protein tyrosine phosphatase (PTP) family AT3G06110 62.590 1.98e-62 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00211 - - lang:109352945 286.96