Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00205 ATGGACACTGGCACACTCTCTTTACTCTCACCTCTTCCTATTTCGCGCGTCCTTTCGTCTCAGAAGCCAACTCCAATTCATAATTGTTACATTTGTCCTTCACATAACCACTTTCTTAGATTCTTCTCCTCCACTAACCTCTCCAAGTTCACAACTCCGCGAGCCATCGTAAACCCTTCTCCCATAACCCCTACAGCCGATGATGCAGTGACCACTCCCACTCTCACAGAATTATGCCAATCTCATGTTCCCGACAATATACTGCAAAGGATGGAAGAGATTGGATATGTCTTGCCTACAGATATCCAGAGGCAAGCATTACCTTATCTTTTTTCCGGGCGTGACTGCATACTTCATGCGCAGACAGGTTCTGGGAAGACACTTACATACCTGCTTTTGATCTATTCCATCATCAACGCCAGAAAATCCTCTGTGCAAGCCCTGATTTTGGTGCCCACCCGTGAACTTGGCATGCAAGTCACTAAGGTTGCTAGGATGTTGGCAGCAAAGCCAATTGGAGTTGAGGGAGAGCAGAAGTCATGTACCATAATGGCTCTGTTAGACGGAGGAACATTGAGAAGACACAAGAGTTGGTTAAAGGCAGAGCCTCCAACAGTAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGATAGACAACTTTTTTTGCTTGAAACTGTGCGGGTGCTGGTTGTTGATGAGGTTGACTTCATTTTCAATTCTTCAAAGCAAGTGAGTTTTCTTCGGAAAATTTTGACTTCATATTCATCTTGCAATAACCGCCAGACGGTTTTTGCCAGTGCATCTATACCACAGCACAACCGATTTCTTCATGACTGTGTGCAGCAAAAATGGACTAAGAGTGATGTGATTCATATTCATGTCAGTGCAGTGGAGCCCATGCCATCTCGCCTATATCATAGATTTATGATATGTGATAAGAAAAGAAAGCTACAAACCCTGTTATCCTTGATACAATCTGATGCACCTGAGTCTGGCATTATATTTGTTGGTGAGCAGTCTGAGAAGTCAAAAAAGGCTGGAAATGCTCCATCCACATCCCTTCTTATTGACTTTCTGAAAACATCATATCAAGGTTCTTTAGATATCCTCCTTCTCGAAGATGACATGAATTTCAATTCACGAGCAGCTTCTCTGTTGGAGGTTAGAAAAGGAGGTGGCCATCTCCTTGTGGCAACAGATATAGCTGCTAGAGGAGTTGACCTTCCAGAAGTGTCTCACATATACAACTTTGATCTGCCAAAGACTGCCATAGATTATCTTCATCGAGCAGGGAGGACTTGTAGAAAACCCTTTTCTGACATGAATTGTACTGTTACTAGCATTATAGTTTCAGAGGAGCGGTTTGTTCTGCAGAGATATGAAAATGAGTTGATGTTTATTTGTGAAGAGCTTATACCATAA 1428 0.4286 MDTGTLSLLSPLPISRVLSSQKPTPIHNCYICPSHNHFLRFFSSTNLSKFTTPRAIVNPSPITPTADDAVTTPTLTELCQSHVPDNILQRMEEIGYVLPTDIQRQALPYLFSGRDCILHAQTGSGKTLTYLLLIYSIINARKSSVQALILVPTRELGMQVTKVARMLAAKPIGVEGEQKSCTIMALLDGGTLRRHKSWLKAEPPTVVVATVGSLCQMLDRQLFLLETVRVLVVDEVDFIFNSSKQVSFLRKILTSYSSCNNRQTVFASASIPQHNRFLHDCVQQKWTKSDVIHIHVSAVEPMPSRLYHRFMICDKKRKLQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTSLLIDFLKTSYQGSLDILLLEDDMNFNSRAASLLEVRKGGGHLLVATDIAARGVDLPEVSHIYNFDLPKTAIDYLHRAGRTCRKPFSDMNCTVTSIIVSEERFVLQRYENELMFICEELIP. 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00205 475 SMART ultradead3 95 310 IPR014001 -
Seca11g00205 475 CDD DEADc 87 282 - -
Seca11g00205 475 Gene3D - 52 286 IPR027417 -
Seca11g00205 475 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 318 475 IPR001650 -
Seca11g00205 475 CDD SF2_C_DEAD 308 437 - -
Seca11g00205 475 Pfam DEAD/DEAH box helicase 100 273 IPR011545 GO:0003676|GO:0005524
Seca11g00205 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 441 IPR027417 -
Seca11g00205 475 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 107 289 IPR014001 -
Seca11g00205 475 SMART helicmild6 355 439 IPR001650 -
Seca11g00205 475 Gene3D - 303 472 IPR027417 -
Seca11g00205 475 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 74 466 - -
Seca11g00205 475 Pfam Helicase conserved C-terminal domain 318 437 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00205 Seca-Chr11 2074905 2080007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00205 77 473 Eukaryotic Initiation Factors Gene Family AT1G72730 27.941 8.75e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00205 - - gmx:100786205 773.081