Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00192 ATGGAGGGTGACGATCCTCCTTGTCCTTCACCCTTCCCCCCTCTATCCTCTTCTTCTTCTTCGCTTCTCAAGGACATCTCCAACTTCAAAACCCCCATACGCCCCCCCCTCTCTCTCACTGCCAAATCTCCCTCCACCCAATTCTTCACTGCTTCCAAACCAACCACTCTCCAACGCCGCCCCAAGAAATCAGCTACCGCCGCCAGGAAACTCAAAGCTTTCCAACTGGAGCAGTCCCAGTCCTCCAGAAAGGCCCAAATCAAAAAGGAACTGTCCCTCAAATCCCTAGCAAAGTCCCTCACCGTTTGGCTCAACTTCTTGCTCGAATGCCCTGCCTCCTGCGGTTGCGACCTCTCCATCGCCGGAGTCCAGATCTCCGACGCCACTCCGGTGACCAAGGGGAAGCGGAGCACTGGCTCGGGAATCTCAGTCGGAGTTGATTCGACCTGGCGAACTCCCAAGCGCCAGAGGAAAACGTGGTCGAGTGTTGGTAAGCAAAATGCCGCGGTCGAGTTGCCGAATAGCTCGTTTTCGCAGTTGAGGGATTCACTGAAGGATATCTGCAGTTTCGAGGATATGAAGCAGCGAATGATGGTTTATCTGAGCCTCGGAACTTGTGAAGATATCTTCCGAGTGATGACTCGGGTGACAAAGACAATTGATGAAGGAAGGCTAAATTTGAAGGCCCACTGCCCGATAGTTACAGATGTTGGGTTGAAGGACAAGGCCACGAGAATTCTTATGTGTTATAATCCAACTTGGCTGCGAATTGGATTATATATAATATTTGGTGGTGACTCCTTGGTGTTAAATGGGGATATGGATTCTGATCAAGATGTCATATTTTTGAAAATGGTCATTGACAAACTATTTTTCTCACATGAGGGTTTAGCAAAAGCATATGCATATAACAAGATGGTTGAAGGAGTATATAGGTCAGGATACTATGAGAATTTAGGGAATGTAATTTTGAAGAGAATTTTGTTACTTGTGCTTATCCTGGATAAAGCTAAATGTCAAAGTTGCCTCCCGCTTGAGTATGGTATTGACGGATTGGATGGGGGTTCCCCTTTATTATTCAAAGCAGAATCCTGGATTAAATCAAGCAGTCAAGTAATCTATGAATTTCTATCGTCTGATGTAATGCACGGAGAAGGCAATCTTCTAGCACATTTGGTTATTTTAGGTTACAAAGTATCTCATCAACAGGGGCCTCTTGTTGAGTATGATTTCAGGGTCAGAGATTTATTTGTGGATCTCCAAGATGGACTAAAACTGTGTAGAGCTATTCAGCTGTTGCAACACAATTCTTCTATCCTCAAGAAAATTTTAGTTCCCTCAGATACTCCTAAGAAAAATCTGGCGAACTGTGGACTTGCCCTACAATATCTCAGGCAAGCTGGTGTGTCGCTACTTGATGAAGATGACACGATGATTGAGACAGATGATATTGTTAATGGAGATAAAGAACTTATACTTTCCTTGCTCTGGAATATGTTTGTTCAATTGCAGCTACCTCTTTTGGTTGATAAAACAAGTTTAGCTAAGGAAATTTCAAAGATTCAAGGACTTGGCATGGATCTAATAGACTGTGCAAATTCCACTTCTCTGGAATTGCTTTTGAATTGGATTCAGGCTGTTTGTGACAATTATGACTGTCCAATTGACAATTTTCATTCCCTTGTTGATGGCAAAGCAATCTGGTGCTTACTTGATTATTACTTCCAGAAGGAACTTGATGATTCCTGCTCATTGAAGGAAGTTAATAAACAAAGTGGCAAGGCATCGATTTTGTCAGTCAATGAATATTCAGATGCACTGTACAATTTTATCTTGTCCCAGAAGTTGACAACTTTACTGGGGAATTTTCCAGAGGTACTTCAAATAAGTGAGCTACTTCAATACAATGGCGCTTGCAATGATCAAAGTGTGGTGATATTGTTGGTTTTCCTAGCAAGCCAATTGTTTGTCAAGAAAAATATGGATCACTTGAATTTTCACAAGCTTTTGGGTAATCATTGCCAAAGTCCGAACCAAAGACATTTGAGGATGATACAGTGCCTTTCATGTTCTAAATCTGTAAAAAATCCGGATGCTTCAGATGTGCATTCTGATGAAGATTATGCAAGAAAATTCAAGGCCATCCAGGCTTGGTGGCAAGGTATGGCTGAACAAAACCATATCATAAAACCAACTGTCTCTATTATGCAGAGATCCAGAACCACTGAATGCATAACCAACAATAGAAGAGAAAATGCCGCAAGAACAATACAATCACATATCAGAGGGTTGGTTGTACGGCGCAAGTTTCTGCAGATGGTGAATGCTGTTACCCTCTTGCAAACTGTTCTCAGAGCTTGGCTAAAAGTGAGGAAGGAGTCCGTCTGCATGATATTCACTACCGTTCAAGTCTATGACTTTGCATGTGAAATAATGAAGCAATCAGAAACATATAAAAGATATGCCATGCTTTTCGTTCATAGGCATTCTTTTTTGAGCTTGAAGAGGTCAGCACAGCTTATCCAGCAAGCTGTTAGGAGTTGGCTCTATTCGAGGCATCAACATGGATGTAGTATCAGTCCTGTTCTTATGATTACAGATACAGTGACTGCTGCCACAACAGTTCAAAAATTTGTTCGGGGTTGGATGGCACGATCGAGATATATTCGTCAACTAGATCAGAAAAAGAAAGCTTTAAATTTAGCCGCACAGAAAATTGCATTTGAACTTCAAACAAAAGCTGCTGTTAGCATTCAGCTTGCTTGGAAGAAGTTCATATCCTACAAGTCTTCTCAGAGGCAACACTTTGTTGCAACTAAAATTCAATGTAATTTCCGAAGGTGGTTCTTGAGAAAAAGATTTCTAAATCAAATTCAAGCTGTTATAAAAGTTCAATCTTATTTTCGAATGTGGAGATGTGTAAATGCTTTTCAGCACTTAAAAATTCTGTCTAAGGCAGCTATTGTCATTCAATCTTTCCTACGTGGTTGGATTGCACGGAAGGATGCTTATGCACGTAGGAATCATATTGTTGAAATTCAGAGGCATTGCCGTGGTTGGCTTCTGAGACGGGACTTTTTGTTCCAAAGAGACGCTATAGTAAAGATCCAGTGTGTCATTCGAAGCCTGAAATGCCAGAAGGCTCTCTATTGTCTGAAAGATGCTGCATTGGAGATCCAGCGCGTCATTAGAGGGCATTTAACTCGAAATCGGTTCTTAGGTAGTGCTTCCCAGTTACGCGCAGTCATTCCTGTTAGATGCATTTCAAAACCAATGTGCTTCTCTAGTTTCCAACTGGAACTATTCATGTTTTCAGTTGTGAAATTGCAACGCTGGTGGAAGGGTCTCATGTCACATAAACTAATGAATAAGTCGGCCATCATTATTCAGTCTTGTACTCGTGGGTGGATAGCCAGACGAAAGGCCACTGTTCACAAACGCCATGTTGTTGTCATGCAAGAACATGCCGCATTGGAGATCCAACGCTATATTAGGGGGCATTTAACTCGAAATCGGATATTAGGCGGTGCTTCTAAACTACGTGCAGTCATTTCTGCTGGTTGCATTTCAAGACCCGTTGGCTGTTGTAGTTTTCAGCTGGAACTCTTCTTGTTTTCAGTTGTTAAATTGCAACAATGGTGGAAAAGTCTCTTGTTACATAAATTAATGACAAAGTCTGCCATTATTATTCAGTCTCGTGCTCGTGGGTGGATAGCCAGGCGAAAGGCCACTGTTCATAGACATCGTATTATTGTCATCCAATCCCACTGGAAAGGTTACCTTGCACGTAGAGAGTCAAAAGAACAGCTATTGGATTTGCGCTTGAGAGTGCAAGAGTCTGCCAGAAATGTGGATGACAGCAAGCGACTTATAAACAGACTCTTGGCAGCACTGTCAGAGCTACTTAATATGAAGAGTCTAAGTAATATCCTTCATACTTGTTCAACACTGGATATGGCTACAAGACATTCTCAGAGATGTTGTGAAGAACTTGTGGCTGCTGGGGCTGTTGATACCTTGCTGTGGCTTACTCGATCAGTTAGCCGGAGTATACCTGATCAGGAGGTTCTAAAGCATGCTTTGTCAACTCTCAGAAACCTTGCCCGTTATCCTCATTTATTAGAAGTGCTGATCCAAAGTCATGGTTCTGTGCAGACAATTGTCTTGGAATTACTGAGGAATAAGCAAGACGGTTACTTCATTGCTTCTGAACTTCTGAAGAAGATGTGTTCAACTCACAAAGGCGTTGAGACGATACTAAAATCCCCTGCCCTACTAAAACGACTGCACAGTCATGTTGAGGAGCTTACTAGGAAGGCCAATTACGAGAAAAGAAATGCTAGGGGTTCTTGTCCGTTTGTTAAAGAGAACAGAGAGAGAAGATTTAAGGAGGCTTCTGAGATTCTGAAGCTGATAAAACGCGCTTGA 4428 0.4216 MEGDDPPCPSPFPPLSSSSSSLLKDISNFKTPIRPPLSLTAKSPSTQFFTASKPTTLQRRPKKSATAARKLKAFQLEQSQSSRKAQIKKELSLKSLAKSLTVWLNFLLECPASCGCDLSIAGVQISDATPVTKGKRSTGSGISVGVDSTWRTPKRQRKTWSSVGKQNAAVELPNSSFSQLRDSLKDICSFEDMKQRMMVYLSLGTCEDIFRVMTRVTKTIDEGRLNLKAHCPIVTDVGLKDKATRILMCYNPTWLRIGLYIIFGGDSLVLNGDMDSDQDVIFLKMVIDKLFFSHEGLAKAYAYNKMVEGVYRSGYYENLGNVILKRILLLVLILDKAKCQSCLPLEYGIDGLDGGSPLLFKAESWIKSSSQVIYEFLSSDVMHGEGNLLAHLVILGYKVSHQQGPLVEYDFRVRDLFVDLQDGLKLCRAIQLLQHNSSILKKILVPSDTPKKNLANCGLALQYLRQAGVSLLDEDDTMIETDDIVNGDKELILSLLWNMFVQLQLPLLVDKTSLAKEISKIQGLGMDLIDCANSTSLELLLNWIQAVCDNYDCPIDNFHSLVDGKAIWCLLDYYFQKELDDSCSLKEVNKQSGKASILSVNEYSDALYNFILSQKLTTLLGNFPEVLQISELLQYNGACNDQSVVILLVFLASQLFVKKNMDHLNFHKLLGNHCQSPNQRHLRMIQCLSCSKSVKNPDASDVHSDEDYARKFKAIQAWWQGMAEQNHIIKPTVSIMQRSRTTECITNNRRENAARTIQSHIRGLVVRRKFLQMVNAVTLLQTVLRAWLKVRKESVCMIFTTVQVYDFACEIMKQSETYKRYAMLFVHRHSFLSLKRSAQLIQQAVRSWLYSRHQHGCSISPVLMITDTVTAATTVQKFVRGWMARSRYIRQLDQKKKALNLAAQKIAFELQTKAAVSIQLAWKKFISYKSSQRQHFVATKIQCNFRRWFLRKRFLNQIQAVIKVQSYFRMWRCVNAFQHLKILSKAAIVIQSFLRGWIARKDAYARRNHIVEIQRHCRGWLLRRDFLFQRDAIVKIQCVIRSLKCQKALYCLKDAALEIQRVIRGHLTRNRFLGSASQLRAVIPVRCISKPMCFSSFQLELFMFSVVKLQRWWKGLMSHKLMNKSAIIIQSCTRGWIARRKATVHKRHVVVMQEHAALEIQRYIRGHLTRNRILGGASKLRAVISAGCISRPVGCCSFQLELFLFSVVKLQQWWKSLLLHKLMTKSAIIIQSRARGWIARRKATVHRHRIIVIQSHWKGYLARRESKEQLLDLRLRVQESARNVDDSKRLINRLLAALSELLNMKSLSNILHTCSTLDMATRHSQRCCEELVAAGAVDTLLWLTRSVSRSIPDQEVLKHALSTLRNLARYPHLLEVLIQSHGSVQTIVLELLRNKQDGYFIASELLKKMCSTHKGVETILKSPALLKRLHSHVEELTRKANYEKRNARGSCPFVKENRERRFKEASEILKLIKRA. 1476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00192 1475 Pfam Armadillo/beta-catenin-like repeat 1325 1369 IPR000225 GO:0005515
Seca11g00192 1475 MobiDBLite consensus disorder prediction 1 20 - -
Seca11g00192 1475 ProSiteProfiles IQ motif profile. 870 897 IPR000048 GO:0005515
Seca11g00192 1475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1206 1269 IPR027417 -
Seca11g00192 1475 ProSiteProfiles IQ motif profile. 1153 1182 IPR000048 GO:0005515
Seca11g00192 1475 ProSiteProfiles IQ motif profile. 1052 1081 IPR000048 GO:0005515
Seca11g00192 1475 Gene3D - 399 504 IPR036872 -
Seca11g00192 1475 ProSiteProfiles IQ motif profile. 1246 1274 IPR000048 GO:0005515
Seca11g00192 1475 Gene3D - 1271 1470 IPR011989 -
Seca11g00192 1475 ProSiteProfiles IQ motif profile. 1122 1149 IPR000048 GO:0005515
Seca11g00192 1475 ProSiteProfiles IQ motif profile. 750 778 IPR000048 GO:0005515
Seca11g00192 1475 SUPERFAMILY Calponin-homology domain, CH-domain 329 586 IPR036872 -
Seca11g00192 1475 ProSiteProfiles IQ motif profile. 983 1012 IPR000048 GO:0005515
Seca11g00192 1475 PANTHER UNCHARACTERIZED 40 855 - -
Seca11g00192 1475 Gene3D - 532 656 IPR036872 -
Seca11g00192 1475 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1335 1382 IPR000225 GO:0005515
Seca11g00192 1475 ProSiteProfiles Calponin homology (CH) domain profile. 382 504 IPR001715 GO:0005515
Seca11g00192 1475 Gene3D - 984 1029 - -
Seca11g00192 1475 Gene3D - 1030 1082 - -
Seca11g00192 1475 Gene3D - 931 983 - -
Seca11g00192 1475 Gene3D - 748 797 - -
Seca11g00192 1475 Gene3D - 1121 1183 - -
Seca11g00192 1475 Gene3D - 1221 1270 - -
Seca11g00192 1475 SMART iq_5 772 795 IPR000048 GO:0005515
Seca11g00192 1475 SMART iq_5 1222 1244 IPR000048 GO:0005515
Seca11g00192 1475 SMART iq_5 1028 1050 IPR000048 GO:0005515
Seca11g00192 1475 SMART iq_5 933 955 IPR000048 GO:0005515
Seca11g00192 1475 SMART iq_5 956 978 IPR000048 GO:0005515
Seca11g00192 1475 SMART iq_5 1051 1073 IPR000048 GO:0005515
Seca11g00192 1475 SMART iq_5 867 889 IPR000048 GO:0005515
Seca11g00192 1475 SMART iq_5 982 1004 IPR000048 GO:0005515
Seca11g00192 1475 SMART iq_5 1245 1267 IPR000048 GO:0005515
Seca11g00192 1475 SMART iq_5 1005 1027 IPR000048 GO:0005515
Seca11g00192 1475 SMART iq_5 1121 1143 IPR000048 GO:0005515
Seca11g00192 1475 SMART iq_5 749 771 IPR000048 GO:0005515
Seca11g00192 1475 SMART iq_5 1152 1174 IPR000048 GO:0005515
Seca11g00192 1475 ProSiteProfiles IQ motif profile. 934 963 IPR000048 GO:0005515
Seca11g00192 1475 SMART arm_5 1324 1369 IPR000225 GO:0005515
Seca11g00192 1475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 882 1003 IPR027417 -
Seca11g00192 1475 CDD CH_ASPM_rpt1 388 499 - -
Seca11g00192 1475 Pfam IQ calmodulin-binding motif 1010 1026 IPR000048 GO:0005515
Seca11g00192 1475 Pfam IQ calmodulin-binding motif 1248 1265 IPR000048 GO:0005515
Seca11g00192 1475 Pfam IQ calmodulin-binding motif 985 1002 IPR000048 GO:0005515
Seca11g00192 1475 Pfam IQ calmodulin-binding motif 752 770 IPR000048 GO:0005515
Seca11g00192 1475 Pfam IQ calmodulin-binding motif 1124 1141 IPR000048 GO:0005515
Seca11g00192 1475 Pfam IQ calmodulin-binding motif 1224 1242 IPR000048 GO:0005515
Seca11g00192 1475 Pfam IQ calmodulin-binding motif 1054 1072 IPR000048 GO:0005515
Seca11g00192 1475 Pfam IQ calmodulin-binding motif 938 954 IPR000048 GO:0005515
Seca11g00192 1475 Pfam IQ calmodulin-binding motif 871 888 IPR000048 GO:0005515
Seca11g00192 1475 Pfam IQ calmodulin-binding motif 959 977 IPR000048 GO:0005515
Seca11g00192 1475 Pfam IQ calmodulin-binding motif 1155 1172 IPR000048 GO:0005515
Seca11g00192 1475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 985 1072 IPR027417 -
Seca11g00192 1475 ProSiteProfiles IQ motif profile. 1006 1035 IPR000048 GO:0005515
Seca11g00192 1475 SUPERFAMILY ARM repeat 1292 1432 IPR016024 -
Seca11g00192 1475 Pfam Calponin homology (CH) domain 412 500 IPR001715 GO:0005515
Seca11g00192 1475 ProSiteProfiles IQ motif profile. 1223 1250 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00192 Seca-Chr11 1968108 1978833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00192 981 1153 Myosins gene family AT5G43900 26.519 3.73e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00192 K16743 - cave:132172458 1623.6