Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00191 ATGCAGCCTGGTATGGCTCCACCGACCATGGCCCAACAGCCCAATCAGCAATATCAACAGCAGCAACAACCTTACATGATGATGCCGCCACAGCCTCAGCCTCAGCCTCCTCCGATGTGGGCCCCATCTGCCCAGCCTCCGGTTCAGTCGGTCCCTCCTCCACATTCGGTTCAGCCTGCCAGCGCCGATGAGGTCCGTACCCTCTGGATCGGCGATTTGCAGTACTGGATGGACGAGAATTATCTCTACAACTGTTTCGCTCACACCGGCGAGGTGGCCTCTGTTAAAGTAATTAGGAATAAGCAAACGAGTCAATCAGAAGGTTATGGATTTCTTGAGTTTACTAGTAGGGCGGCTGCTGAGAGAATACTTCAAACATATAATGGCACCATTATGCCAAATGGTGGGCAGAACTTTAGATTGAACTGGGCAACTTTTAGTGCTGGTGAGAGGCGGCATGATGATAGTCCAGATTATACCATTTTTGTTGGCGACTTGGCTGCGGATGTTACAGATTATCTTCTGCAGGACACATTTAGAACCCGGTATCCCTCAGTTAAGGGGGCCAAAGTTGTAATTGATAGGCTCACAGGCCGAACAAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAAGTTAGGGCGATGACTGAAATGCAAGGGGTTCTCTGTTCAACAAGACCAATGCGTATTGGACCAGCCTCTAACAAAAACCCTGGCACTCAGTCAAAAGGGTGTCAAGAGGCTCTATCATCTCTGAGCCTGGAACTGATTTCAGCTGAAATGGTTACCATTTTAGTGCATGGCCTTGCTGTCTTTCTCCATGAACTGCTCTGGCTTCTTTTTTGTTATTCATCTTTTTACTTGTACTTTGAACATGCAGTATCATATCAGAATCCTCAAGGGGCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTCGGCAATTTGGATCCTAATGTCACGGATGATCATTTGAGACAAGTTTTTGGGCAGTATGGAGAGCTAGTTCATGTGAAGATTCCAGCAGGCAAGAGATGTGGGTTTGTCCAATTTGCGGACAGGAGCTGTGCAGAGGAGGCCTTGCGGGTTTTAAATGGTACACTTTTGGGGGGACAAAATGTTCGGCTTTCATGGGGCCGAAGTCCTTCAAACAAGCAGACTCAATCAGATCCAAACCAATGGAATTCTAGTGGATATTATGGATATGCTCAGGGTTATGAAAACTATGGTTATGCTCCTGCTGGACAGGACCCCAATATGTATGGCGGTTATCAAGGGTATGCGAATTACCAACCTCCTCAGCAACAGCAGCAAATAGGTTATAGTTGA 1344 0.4658 MQPGMAPPTMAQQPNQQYQQQQQPYMMMPPQPQPQPPPMWAPSAQPPVQSVPPPHSVQPASADEVRTLWIGDLQYWMDENYLYNCFAHTGEVASVKVIRNKQTSQSEGYGFLEFTSRAAAERILQTYNGTIMPNGGQNFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYLLQDTFRTRYPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPGTQSKGCQEALSSLSLELISAEMVTILVHGLAVFLHELLWLLFCYSSFYLYFEHAVSYQNPQGAQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQSDPNQWNSSGYYGYAQGYENYGYAPAGQDPNMYGGYQGYANYQPPQQQQQIGYS. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00191 447 Gene3D - 294 395 IPR012677 -
Seca11g00191 447 FunFam Polyadenylate-binding protein RBP45C 151 243 - -
Seca11g00191 447 Gene3D - 151 251 IPR012677 -
Seca11g00191 447 Gene3D - 5 150 IPR012677 -
Seca11g00191 447 MobiDBLite consensus disorder prediction 1 59 - -
Seca11g00191 447 SUPERFAMILY RNA-binding domain, RBD 154 245 IPR035979 GO:0003676
Seca11g00191 447 FunFam Polyadenylate-binding protein RBP45 7 150 - -
Seca11g00191 447 FunFam Polyadenylate-binding protein RBP45C 294 418 - -
Seca11g00191 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 146 IPR000504 GO:0003723
Seca11g00191 447 MobiDBLite consensus disorder prediction 27 54 - -
Seca11g00191 447 MobiDBLite consensus disorder prediction 1 26 - -
Seca11g00191 447 SMART rrm1_1 160 234 IPR000504 GO:0003723
Seca11g00191 447 SMART rrm1_1 315 382 IPR000504 GO:0003723
Seca11g00191 447 SMART rrm1_1 67 142 IPR000504 GO:0003723
Seca11g00191 447 MobiDBLite consensus disorder prediction 433 447 - -
Seca11g00191 447 SUPERFAMILY RNA-binding domain, RBD 291 410 IPR035979 GO:0003676
Seca11g00191 447 MobiDBLite consensus disorder prediction 427 447 - -
Seca11g00191 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 238 IPR000504 GO:0003723
Seca11g00191 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 386 IPR000504 GO:0003723
Seca11g00191 447 SUPERFAMILY RNA-binding domain, RBD 26 147 IPR035979 GO:0003676
Seca11g00191 447 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 58 390 - -
Seca11g00191 447 CDD RRM1_SECp43_like 67 147 - -
Seca11g00191 447 CDD RRM2_SECp43_like 158 237 - -
Seca11g00191 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 379 IPR000504 GO:0003723
Seca11g00191 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 133 IPR000504 GO:0003723
Seca11g00191 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 224 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00191 Seca-Chr11 1962902 1966991 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00191 67 393 Eukaryotic Initiation Factors Gene Family AT2G23350 23.200 2.97e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00191 - - aprc:113864230 601.282