Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00190 ATGATGCAGCCTGGCATGCCTCCACCCACCATGGCCCAACAGTCCAACCAGCAATACCAACAGCAGCAACAACTATACATGATGATGCCGCCACAGCCTCAAGCTCAGCCTCCTCCGATGTGGGCCCCATCTGCCCAGCTTCCGGTTCAGTCGGTCCCTCCTCCACAATCGGTTCAACCTGCCGGCGCCGATGAGATCCGTACCCTATGGATCGGCGATTTGCAGTACTGGATGGACGAGAATTATCTCCACAATTGTTTCGCTCACACCGGCGAGGTGGCCTCTGTTAAAGTAATTAGGAACAAGCAAACTAGTCAATCAGAAGGTTATGGATTTCTAGAGTTTACTAGTAGGGCTGCTGCTGAGAGAATACTTCAAACATATAATGGCACCATTATGCCAAATGGTGGGCAGAACTTTAGATTGAACTGGGCAACTTTTAGTGCTGGTGAGAGGCGGCATGATGATAGTCCAGATTATACCATTTTTGTTGGCGACTTGGCTGCGGATGTTACAGATTATCTTCTTCAAGAAACATTTAGAACTCGGTTTCCCTCAGTTAAGGGGGCCAAAGTTGTAATTGATAGGCTCACTGGCCGAACAAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAAGTTAGGGCGATGACTGAAATGCAAGGGGTTCTCTGTTCAACAAGACCAATGCGAGTTGGACCAGCCTCTAACAAAAACCCGGGCACTCAGTCAAAAGCAGGGTGTCAAGAGGCTCTATCATCTCTGAGCCTGGAACTGATTTCAGCTGAAATGGTTACCATTTTAGGTATTGTATCAGTGTCTTTCTCCATGAACTGCTCTGGCTTCTTTTATTGTCATTTATCTTTTAACTTGTACTTTGAACATGCAGCATCATATCAGAATCCTCAAGGGGCACAGAACGAGAATGATCCAAATAATACAACTGTGCGTACTTCTTTGCAACACAGAAATTTCTCTCCATTGTGCGTGTTGATTTTTGTCGGCAATTTGGATCCTAATGTCACAGATGATCATTTGAGACAAGTTTTTGGGCAGTATGGAGAGCTAGTTCATGTGAAGATTCCAGCCGGCAAGAGATGTGGGTTTGTCCAATTTACGGACAGGAGCTGTGCAGAGGAGGCTTTGCGGGTTTTAAATGGTACACTTTTGGGGGGACAAAATGTTTGGCTTTCATGGGGCCGAAGTCCTTCAAACAAGCAGACTCAATCAGATCCAAACCAATGGAATTCTAGTGGATATTATGGATATGCTCAGGGTTATGAAAACTATGGTTATGCTCCTGCTGGACAGGACCCCAATATGTATGGCGGTTATCAAGGGTATGCTCAGCAACAGCAGCGAATAGGATATAGTTGA 1383 0.457 MMQPGMPPPTMAQQSNQQYQQQQQLYMMMPPQPQAQPPPMWAPSAQLPVQSVPPPQSVQPAGADEIRTLWIGDLQYWMDENYLHNCFAHTGEVASVKVIRNKQTSQSEGYGFLEFTSRAAAERILQTYNGTIMPNGGQNFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYLLQETFRTRFPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRVGPASNKNPGTQSKAGCQEALSSLSLELISAEMVTILGIVSVSFSMNCSGFFYCHLSFNLYFEHAASYQNPQGAQNENDPNNTTVRTSLQHRNFSPLCVLIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFTDRSCAEEALRVLNGTLLGGQNVWLSWGRSPSNKQTQSDPNQWNSSGYYGYAQGYENYGYAPAGQDPNMYGGYQGYAQQQQRIGYS. 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00190 460 FunFam polyadenylate-binding protein RBP45 299 412 - -
Seca11g00190 460 Gene3D - 151 253 IPR012677 -
Seca11g00190 460 Gene3D - 7 150 IPR012677 -
Seca11g00190 460 CDD RRM1_SECp43_like 68 148 - -
Seca11g00190 460 CDD RRM2_SECp43_like 159 238 - -
Seca11g00190 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 225 IPR000504 GO:0003723
Seca11g00190 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 334 397 IPR000504 GO:0003723
Seca11g00190 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 134 IPR000504 GO:0003723
Seca11g00190 460 SUPERFAMILY RNA-binding domain, RBD 154 245 IPR035979 GO:0003676
Seca11g00190 460 Gene3D - 296 452 IPR012677 -
Seca11g00190 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 147 IPR000504 GO:0003723
Seca11g00190 460 SUPERFAMILY RNA-binding domain, RBD 27 148 IPR035979 GO:0003676
Seca11g00190 460 SMART rrm1_1 68 143 IPR000504 GO:0003723
Seca11g00190 460 SMART rrm1_1 333 400 IPR000504 GO:0003723
Seca11g00190 460 SMART rrm1_1 161 235 IPR000504 GO:0003723
Seca11g00190 460 MobiDBLite consensus disorder prediction 1 21 - -
Seca11g00190 460 FunFam Polyadenylate-binding protein RBP45 8 151 - -
Seca11g00190 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 332 404 IPR000504 GO:0003723
Seca11g00190 460 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 59 408 - -
Seca11g00190 460 FunFam Polyadenylate-binding protein RBP45C 152 244 - -
Seca11g00190 460 SUPERFAMILY RNA-binding domain, RBD 333 428 IPR035979 GO:0003676
Seca11g00190 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 239 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00190 Seca-Chr11 1947310 1951374 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00190 68 411 Eukaryotic Initiation Factors Gene Family AT1G49760 24.129 2.47e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00190 - - aprc:113864230 604.749