Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00189 ATGATGCAGCCTGGCATGCCTCCACCCACCATGGCTCAACAGTCCAACCAGCAATACCAACAGCAGCAACCACCCTACATGATGATGCCGCCACAGCCTCAAGCTCAGCCTCCTCCGGTGTGGGCCCCATCTGCCCAGCCTCCGGTTCAGTCGGTCCCTCCTCCACAATCGGTTCAACCTGCCAGCGCCGATGAGATCCGTACCCTATGGATCGGCGATTTGCAGTACTGGATGGACGAGAATTATCTCTACAATTGTTTCGCTCACACCGGCGAGGTGGCCTCTGTTAAAGTAATTAGGAATAAACAAACTAGTCAATCAGAAGGTTATGGATTTCTTGAGTTTACTAGTAGGGCTGCTGCTGAGAGAATACTTCAAACATATAATGGCACCATTATGCCTAATGGTGGGCAGAACTTTAGATTGAACTGGGCAACTTTTAGTGCTGGTGAGAGGCGGCATGATGATAGTCCAGATTATACCATTTTTGTTGGCGACTTGGCTGCGGATGTTACAGATTATCTTCTTCAAGAAACATTTAGAACTCGGTTTCCCTCAGTTAAGGGGGCCAAAGTTGTAATTGATAGGCTCACTGGCCGAACAAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAAGTTAGGGCGATGACTGAAATGCAAGGGGTTCTCTGTTCAACAAGACCAATGCGAGTTGGACCAGCCTCTAACAAAACCCCGGGCACTCAGTCAAAAGGGTGTCAAGAGGCTCTGTCATCTCTGAGCCTGGAACTGGTTTCAGCTGAAATGGTTACCATTTTAGTGCATGGCCTTGCGTAG 825 0.4861 MMQPGMPPPTMAQQSNQQYQQQQPPYMMMPPQPQAQPPPVWAPSAQPPVQSVPPPQSVQPASADEIRTLWIGDLQYWMDENYLYNCFAHTGEVASVKVIRNKQTSQSEGYGFLEFTSRAAAERILQTYNGTIMPNGGQNFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYLLQETFRTRFPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRVGPASNKTPGTQSKGCQEALSSLSLELVSAEMVTILVHGLA. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00189 274 SMART rrm1_1 161 235 IPR000504 GO:0003723
Seca11g00189 274 SMART rrm1_1 68 143 IPR000504 GO:0003723
Seca11g00189 274 MobiDBLite consensus disorder prediction 26 55 - -
Seca11g00189 274 CDD RRM1_SECp43_like 68 148 - -
Seca11g00189 274 Gene3D - 7 154 IPR012677 -
Seca11g00189 274 SUPERFAMILY RNA-binding domain, RBD 155 246 IPR035979 GO:0003676
Seca11g00189 274 CDD RRM2_SECp43_like 159 238 - -
Seca11g00189 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 225 IPR000504 GO:0003723
Seca11g00189 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 134 IPR000504 GO:0003723
Seca11g00189 274 FunFam Polyadenylate-binding protein RBP45 8 151 - -
Seca11g00189 274 MobiDBLite consensus disorder prediction 8 25 - -
Seca11g00189 274 FunFam Polyadenylate-binding protein RBP45C 152 244 - -
Seca11g00189 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 147 IPR000504 GO:0003723
Seca11g00189 274 SUPERFAMILY RNA-binding domain, RBD 27 147 IPR035979 GO:0003676
Seca11g00189 274 MobiDBLite consensus disorder prediction 1 60 - -
Seca11g00189 274 Gene3D - 159 235 IPR012677 -
Seca11g00189 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 239 IPR000504 GO:0003723
Seca11g00189 274 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 59 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00189 Seca-Chr11 1935354 1937078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00189 68 241 Eukaryotic Initiation Factors Gene Family AT4G34110 25.287 9.41e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00189 - - gmx:100796848 368.237