Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00188 ATGTTTGAACATATTGTTTCATCATATCAGAATCCTCAAGGGGCACAGAACGAGAATGATCCTAATAATACAACTATTTTTGTCGGCAATTTGGATCCTAATGTTACAGATGATCATTTGAGACAAGTTTTTGGGCAGTATGGAGAGCTAGTTCATGTGAAGATTCCGGCAGGCAAGAGATGTGGGTTTGTCCAATTTGCGGACAGGAGCTGTGCAGAGGAGGCGTTGCGGGTTTTAAATGGTACACTTTTGGGGGGACAAAATGTTCGGCTTTCATGGGGCCGAAGTCCTTCAAACAAGCAGACTCAATCAGATCCAAACCAATGGAATTCTAGTGGATATTATGGATATGCTCAGGGTTATGAAAACTATGGTTATGCTCCTTCTGGACAGGACCCCAATATGTATGGCGGTTATCAAGGGTATGCAAATTACCAACCCCCTCAGCAACAGCAGCAAATAGGATATAATTGA 474 0.4262 MFEHIVSSYQNPQGAQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQSDPNQWNSSGYYGYAQGYENYGYAPSGQDPNMYGGYQGYANYQPPQQQQQIGYN. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00188 157 MobiDBLite consensus disorder prediction 138 157 - -
Seca11g00188 157 SUPERFAMILY RNA-binding domain, RBD 9 120 IPR035979 GO:0003676
Seca11g00188 157 MobiDBLite consensus disorder prediction 143 157 - -
Seca11g00188 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 96 IPR000504 GO:0003723
Seca11g00188 157 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 14 111 - -
Seca11g00188 157 Gene3D - 6 106 IPR012677 -
Seca11g00188 157 FunFam Polyadenylate-binding protein RBP45C 3 128 - -
Seca11g00188 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 89 IPR000504 GO:0003723
Seca11g00188 157 SMART rrm1_1 25 92 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00188 Seca-Chr11 1932648 1934287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00188 24 81 Eukaryotic Initiation Factors Gene Family AT2G23350 42.857 4.77e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00188 - - aprc:113864230 266.544