Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00181 ATGGGCTGTCACGGTAGCAAGGAGAAAAAATCAAGGACAGAGTATAGTGGGTATGGATCAGGCACAGGTGGTGGCGTTAATTACAACACTGTTCAACCATCTTCTACTCAGGTTCAGACATCAGCACCCAAGCCACAGTCACAGACACAGTCACAGTCACAGTCACAGTCACAGGCTCCAATTGTCACCCCACAAAACTCAAAGCCTTGTGCCCAGAATGTGAGGGTGGGGCAGAAGGTAGACACAACCATATTGGGCAAACCATTTGAAGACATCAAAAAGTTCTATACTTTGGGGAAAGAGTTGGGTAGAGGGCAATTTGGAATCACCTATCTGTGCACTGAGAATTCCACTGGCAACACTTATGCCTGCAAATCTATTTTGAAGAGGAAGCTTGTTTCCAAAGCTGATAAAGATGACATGAAGAGAGAGATTCAGATTATGCAGCATTTGTCTGGGCAACCCAACATTGTGGAATTTAAGGGTGCTTACGAGGACAGGTATTCGGTGCATCTTGTGATGGAACTCTGTGAAGGTGGTGAGCTTTTTGATCGAATCATTGCTCAGGGTCACTATTCTGAGAGAGCTGCTGCATCAATTTGCCGAGCCATTGTTAATGTTGTGCACATTTGCCATTTCATGGGTGTCTTGCATCGCGATCTAAAGCCTGAGAATTTCTTGCTTTCTAGCAAGGATGAAGGAGCAACGCTCAAGGCAACTGATTTTGGACTCTCTGTCTTCATTGAAGAAGGGAAGGTTTACCGTGATATGGTAGGCAGTGCCTACTATGTTGCTCCTGAGGTATTGCGTCGTAGTTATGGAAAGGAAATAGATATTTGGAGTGCAGGCATCATATTGTATATTCTCCTGAGTGGTGTACCACCTTTCTGGGCTGAAACTGAAAAAGGAATATTTAACGCCATATTGGAAGGTGAAATTGACTTTGTAAGTGAACCGTGGCCATCAATATCAGACAGTGCTAAAGATCTAGTCAGGAAGATGCTGAATCAGGATCCAAAGAAGCGGATTACTTCTGCTCAAGTCCTTGAACACCCATGGATGAGAGAAGGTGGAGAGGCGTCTGATAAACCAATTGACAGTGCAGTTCTATCTAGAATGAAACAATTCAGGGCAATGAATAAGCTCAAAAAACTTGCATTGAAGGTTATTGCTGAAAATCTATCAGAAGAGGAGATTAAAGGTCTCAAAGCAATGTTTGCAAATATGGACACCGATAATAGTGGCACCATCACCTATGAAGAACTGAAGACAGGCTTGGCTCGAATTGGATCGAGCCTGTCTGAGGCTGAAGTGAAGCAACTCATGGAAGCTGCTGATGTTGATGGAAATGGGTCAATTGACTATATTGAATTCATCTCAGCTACAATGCACAGGCACAGACTTGAACGGGATGAACATCTTTTCAAAGCATTCAAGTATTTTGATAAGGACAACAGTGGGTACATTACTAGAGATGAATTGGAGACTGCCATGACACAGCATGGAATGGGTGATGAAGCAACAATAAAGGAAATAATTTCTGAGGTGGATACAGATAATGATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAAAAGTGGAATGCCACACCAGGGACAGCTACTTTAG 1635 0.4312 MGCHGSKEKKSRTEYSGYGSGTGGGVNYNTVQPSSTQVQTSAPKPQSQTQSQSQSQSQAPIVTPQNSKPCAQNVRVGQKVDTTILGKPFEDIKKFYTLGKELGRGQFGITYLCTENSTGNTYACKSILKRKLVSKADKDDMKREIQIMQHLSGQPNIVEFKGAYEDRYSVHLVMELCEGGELFDRIIAQGHYSERAAASICRAIVNVVHICHFMGVLHRDLKPENFLLSSKDEGATLKATDFGLSVFIEEGKVYRDMVGSAYYVAPEVLRRSYGKEIDIWSAGIILYILLSGVPPFWAETEKGIFNAILEGEIDFVSEPWPSISDSAKDLVRKMLNQDPKKRITSAQVLEHPWMREGGEASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIKGLKAMFANMDTDNSGTITYEELKTGLARIGSSLSEAEVKQLMEAADVDGNGSIDYIEFISATMHRHRLERDEHLFKAFKYFDKDNSGYITRDELETAMTQHGMGDEATIKEIISEVDTDNDGRINYEEFCAMMKSGMPHQGQLL. 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00181 544 SUPERFAMILY EF-hand 393 533 IPR011992 -
Seca11g00181 544 ProSiteProfiles EF-hand calcium-binding domain profile. 505 539 IPR002048 GO:0005509
Seca11g00181 544 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Seca11g00181 544 Gene3D - 362 536 - -
Seca11g00181 544 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Seca11g00181 544 ProSitePatterns Protein kinases ATP-binding region signature. 102 129 IPR017441 GO:0005524
Seca11g00181 544 FunFam calcium-dependent protein kinase 1 182 361 - -
Seca11g00181 544 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Seca11g00181 544 SMART serkin_6 96 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00181 544 FunFam Calcium-dependent protein kinase 1 362 537 - -
Seca11g00181 544 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Seca11g00181 544 CDD STKc_CAMK 95 353 - -
Seca11g00181 544 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Seca11g00181 544 ProSitePatterns EF-hand calcium-binding domain. 517 529 IPR018247 -
Seca11g00181 544 Pfam EF-hand domain pair 402 462 IPR002048 GO:0005509
Seca11g00181 544 Pfam EF-hand domain pair 472 534 IPR002048 GO:0005509
Seca11g00181 544 PANTHER SERINE/THREONINE-PROTEIN KINASE 90 529 - -
Seca11g00181 544 SUPERFAMILY Protein kinase-like (PK-like) 95 362 IPR011009 -
Seca11g00181 544 FunFam Calcium-dependent protein kinase 1 98 181 - -
Seca11g00181 544 CDD EFh 473 534 IPR002048 GO:0005509
Seca11g00181 544 SMART efh_1 508 536 IPR002048 GO:0005509
Seca11g00181 544 SMART efh_1 401 429 IPR002048 GO:0005509
Seca11g00181 544 SMART efh_1 473 501 IPR002048 GO:0005509
Seca11g00181 544 SMART efh_1 437 465 IPR002048 GO:0005509
Seca11g00181 544 MobiDBLite consensus disorder prediction 15 70 - -
Seca11g00181 544 Gene3D Phosphorylase Kinase; domain 1 98 181 - -
Seca11g00181 544 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Seca11g00181 544 Pfam Protein kinase domain 96 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00181 544 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Seca11g00181 544 Gene3D Transferase(Phosphotransferase) domain 1 182 361 - -
Seca11g00181 544 MobiDBLite consensus disorder prediction 1 70 - -
Seca11g00181 544 ProSiteProfiles Protein kinase domain profile. 96 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00181 Seca-Chr11 1856000 1861198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00181 1 544 EF-hand Containing Proteins AT4G04720 75.592 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca11g00181 Pkinase 2.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00181 K13412 - gmx:100816859 920.613