Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00147 ATGAACAACAATTATAGTGATAGAGGCAATGATAGTTCTGATGAAAGTCATAGTGAAGATAACAATGATGTGGGTAATCAGAATGAGGCAGTGGACGAAGATTTAACATATGAACAGTATAAAAGTATAATAGACCTAACTGCGAATGACGTTCGAGGTATGGAGTTTGGTAGTGAAGAGCATGCATGTAAATTTTATGATTCATATGCTAGGTGTCATGGCTTTGTTGCAAGAAAAGATGATATAAAACGTGATGCGGAAGACAATATTATAATGCGTCAATTGGTTTGCAACAAAGAGGGGTTGAGAAATAAAAAGCACTTTATAAGGTTGGATAGAAAGAGACCTCATAGGCCAATCACTCGTACTAGTTGTCAAGCTAAGCTTAGAGTACACTTTGATTACAAGAGATCAAAATGGACAGTCTTGTCCTTTGTGGAGACTCATAATCATTATTTATGTCCACCAAGATATAGACACTTAATCCCTGCACATCGCAAGATGGGTGATACAGATAAAGCTCAAGCGGAAAGTTTGCATTCCTATGGAGTTAGGACTTGTCACATTATGGGATATATGTTGGCTCAGAAAGGTGGGTATAGTGCTTTAGGGTTTACCAAAAAGGATATGTACAATTATTTTAGTGAGAAAAACCGTGAGAAGATCAAAGATGGGGATGCATGCATTGCATTAAGTTATTTACAAGGCAAGGCAGATAATAATGGATTGATGCATTCATCATATTCATTTACAAGTGATGGTAAATTGAAGAATTTGTTCTGGGCAGATGAAGTTAGTAGAAGTGATTTTCAGTGCTTTGGTGATGTTCTAGCATTTGACACCACTTACAAAAAAAACAAGTACAACAGACCTCTAGTGATTTTCTCCGGTTGCAATCATCATTCACAGACTGTTATCTTTGGTTGTGCCTTGGTGAGTGATGAAACAATTGATACTTATAAGTGGCTGTTAGAATCCTTTTTAGATGCTATGTGGAATAAACATCCTAAAGCTGTGGTGACAGATGGTGATGGGGCTATGAGGGAGGCAATCAAGCAAGTTTTTCCAAATGCAACCCATAGACTCTGTGCGTGGCACTTACATAAGAATGCATGTGAGAACGTGAAGAATTCCTCATTCTTAGGGGATTTCAAGACTGCAATGTATGCTAATTTTACACCAGAAAAATTTGAAAATTTTTGGCAGCAATTGATTTTGAAACACGGGCTTGTAGAAAACAAGTGGGTTTCTAAAACCTATGAGAACAAGTATATGTGGGCTAGTGCATACTTGCGTGATAAGTTCTTTGGTCGTATAAGGACAACTTCACAATGTGAAGCCATTAATTCTCCTGTCAAGTCATATGCTAATAACAAATGTAGCATTATTGACTTCATGCATAAATTTGAGCAAGTGGTGAGGGAATATAGAAACAATGAGCTCATGGCAGATTTTAAGTGTTTCTGGTCAGAACCTGTGCTAACCACTTCTCTTTACAAGATTGAGCGTGATGCTTCAAAAATTTTCACCCAAGAGATTTTTAAGGATGTTAAATCTGAAATTGAAGCTGTTGGTGCCTTGAATGTTATTGAACGTGTGATAAATGGTGAGAAATTAATATTGAAGATGAACAAATATTGTGATATTGGAAGTGAATTTGTTGTTGATTATGATACTGTGAACTGTAATTTTTTCTGTGAATGCAAACTATTTGAATCTCGTGGCATTCCATGTGCTCATATTATATGTGCCATGAAAAATGAGCACATAGACTCCATTCCTAGCAGTTTGATATGCAAACGGTGGACAAAAACTGCGAAGAGTGATATTATTTCTGCAAGTCGATTGGATGATTTAGATTCTGATGTCATGTCTGGGGCTGCAGCTGCTGCTTGTAATAGATTATGCAGTATTGCTAGAGAGAAGAATGCATGTTTCAATGATATTTTAAATGATATCTTTAAGCTGCTTAATAAGTATGAGAATCAAGGGGATCCAAACAGCACAGTTAGGTCATCTTTTAAGGATGTGGGTGATCCATATTTAGTGAAAACAAAAGGTGCTCCATCCAAGAAAAAGTACGGAAGGAAGAGGAGATGTTCAAATTGTAGTAGACCTGGACACATAGCTAGGAAATGTCCTAGGCTCCTTTCCACGGATAATCAAGTTCCTATGGATGGTGATTCTTCACATTCAGATGGTGATGGTTTCACAATAGGAGAAGAAAATGTAATTTTTTTATAA 2244 0.3676 MNNNYSDRGNDSSDESHSEDNNDVGNQNEAVDEDLTYEQYKSIIDLTANDVRGMEFGSEEHACKFYDSYARCHGFVARKDDIKRDAEDNIIMRQLVCNKEGLRNKKHFIRLDRKRPHRPITRTSCQAKLRVHFDYKRSKWTVLSFVETHNHYLCPPRYRHLIPAHRKMGDTDKAQAESLHSYGVRTCHIMGYMLAQKGGYSALGFTKKDMYNYFSEKNREKIKDGDACIALSYLQGKADNNGLMHSSYSFTSDGKLKNLFWADEVSRSDFQCFGDVLAFDTTYKKNKYNRPLVIFSGCNHHSQTVIFGCALVSDETIDTYKWLLESFLDAMWNKHPKAVVTDGDGAMREAIKQVFPNATHRLCAWHLHKNACENVKNSSFLGDFKTAMYANFTPEKFENFWQQLILKHGLVENKWVSKTYENKYMWASAYLRDKFFGRIRTTSQCEAINSPVKSYANNKCSIIDFMHKFEQVVREYRNNELMADFKCFWSEPVLTTSLYKIERDASKIFTQEIFKDVKSEIEAVGALNVIERVINGEKLILKMNKYCDIGSEFVVDYDTVNCNFFCECKLFESRGIPCAHIICAMKNEHIDSIPSSLICKRWTKTAKSDIISASRLDDLDSDVMSGAAAAACNRLCSIAREKNACFNDILNDIFKLLNKYENQGDPNSTVRSSFKDVGDPYLVKTKGAPSKKKYGRKRRCSNCSRPGHIARKCPRLLSTDNQVPMDGDSSHSDGDGFTIGEENVIFL. 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00147 747 ProSiteProfiles Zinc finger SWIM-type profile. 553 589 IPR007527 GO:0008270
Seca11g00147 747 Gene3D - 683 727 - -
Seca11g00147 747 Pfam MULE transposase domain 276 370 IPR018289 -
Seca11g00147 747 ProSiteProfiles Zinc finger CCHC-type profile. 698 715 IPR001878 GO:0003676|GO:0008270
Seca11g00147 747 SMART c2hcfinal6 699 715 IPR001878 GO:0003676|GO:0008270
Seca11g00147 747 MobiDBLite consensus disorder prediction 1 32 - -
Seca11g00147 747 Pfam Zinc knuckle 699 714 IPR001878 GO:0003676|GO:0008270
Seca11g00147 747 Pfam FAR1 DNA-binding domain 64 154 IPR004330 -
Seca11g00147 747 SMART 26again6 564 591 IPR006564 GO:0008270
Seca11g00147 747 SUPERFAMILY Retrovirus zinc finger-like domains 690 721 IPR036875 GO:0003676|GO:0008270
Seca11g00147 747 PANTHER OS01G0519700 PROTEIN 51 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00147 Seca-Chr11 1575825 1578068 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g00147 MULE 4.7e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00147 - - ccaj:109792835 918.302