Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00145 ATGGCCACCTCAACCTCACTACTCCTCTTGCTCTCATGCATCTTATTACACCAACATACTTTAAGCTTGGTTAATGCCTCTTCCTACTACAGCACCACTTCTCAATCCATTTCCAAGACCAAGACTCCTAAGAAAGCATTTCTCAACGAAATAGACTCTTGCTGGCGGGCCAATTCAAATTGGGCATCAAATCGCCAAGCCTTGGCTGATTGTGCAATTGGTTTTGGCAAAGATGCCATTGGAGGCAAGTATGGCCCAATATATGTGGTCACAGATCCCTCTGATGACCCTGCAAACCCAAAACCAGGCACACTTCGTTATGGAGCAATCCAAACTAAGCCCCTTTGGATCATTTTTGGGAGGGACATGGTTATAACACTAAAAAATGAGCTTATAATGAATAGCTACAAGACCATTGATGGGAGAGGAGCTAAAGTGGAGATTGCAAATGGGCCTTGTATTACAATACAAGGTGTTAGCCATGTTATTATACATGGCATTAGCATCCATGATTGTAAGCCAGGCAAGGCTGGCCTTGTGAGGAGTACTCCTGACCATGTTGGCCATCGTCAAGGCTCTGATGGAGATGCCATTAGTATTTTTTCTTCCTCAAATGTTTGGATTGATCATTGCTTTTTGGCTCGTTGTGCTGATGGCCTAATTGATATTATTCATGCCTCAACTGCCATTACAGTTTCTAACAATTACTTAACCCAGCATGACAAAGTTATGTTGCTAGGACACAATGACCAATACACAGCAGATAAAATCATGAGAGTTACAATTGCCTTCAACAGGTTTGCTAGTGGCCTAACTGAAAGGATGCCAAGGGTGAGATTTGGTTATGCTCATGTGGTCAACAACAAATATGATGAATGGAGAATGTATGCTATAGGTGGTAGTGCTAACCCAACCATTTTAAGTGAAGGGAATTTTTATATAGCACCAAATAACCCAAGTGCAAAACAGATTACCAAGAGGGAAGTGAAGGAAAAGTGGAACGGTTGGAAATGGAGGTCTTCTAAGGATGTATTCTTGAATGGTGCTTATTTTGTACCATCTGGGTATGGAAGTTGTGCACCGAATTATTCTCCTTCCCAATCTTTTGCAGTTGTTCCAGCGTACATGGTGCCTGCAATAACTCTCAATGCAGGTCCCTTGAATTGTGTTGTTGGGAAAGCATGTTAA 1188 0.4209 MATSTSLLLLLSCILLHQHTLSLVNASSYYSTTSQSISKTKTPKKAFLNEIDSCWRANSNWASNRQALADCAIGFGKDAIGGKYGPIYVVTDPSDDPANPKPGTLRYGAIQTKPLWIIFGRDMVITLKNELIMNSYKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPGKAGLVRSTPDHVGHRQGSDGDAISIFSSSNVWIDHCFLARCADGLIDIIHASTAITVSNNYLTQHDKVMLLGHNDQYTADKIMRVTIAFNRFASGLTERMPRVRFGYAHVVNNKYDEWRMYAIGGSANPTILSEGNFYIAPNNPSAKQITKREVKEKWNGWKWRSSKDVFLNGAYFVPSGYGSCAPNYSPSQSFAVVPAYMVPAITLNAGPLNCVVGKAC. 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00145 395 PANTHER PECTATE LYASE 18-RELATED 31 393 IPR045032 GO:0030570
Seca11g00145 395 Gene3D - 48 388 IPR012334 -
Seca11g00145 395 PRINTS Pollen allergen Amb family signature 71 88 IPR018082 -
Seca11g00145 395 PRINTS Pollen allergen Amb family signature 366 389 IPR018082 -
Seca11g00145 395 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Seca11g00145 395 PRINTS Pollen allergen Amb family signature 130 146 IPR018082 -
Seca11g00145 395 PRINTS Pollen allergen Amb family signature 94 119 IPR018082 -
Seca11g00145 395 PRINTS Pollen allergen Amb family signature 194 215 IPR018082 -
Seca11g00145 395 PRINTS Pollen allergen Amb family signature 336 360 IPR018082 -
Seca11g00145 395 PRINTS Pollen allergen Amb family signature 274 293 IPR018082 -
Seca11g00145 395 Pfam Pectate lyase 130 313 IPR002022 -
Seca11g00145 395 SMART amb_all 122 319 IPR002022 -
Seca11g00145 395 SUPERFAMILY Pectin lyase-like 32 386 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00145 Seca-Chr11 1563065 1564755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00145 21 395 Polysaccharide Lyase AT1G11920 68.617 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00145 K01728 - gmx:100807483 654.44