Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00140 ATGGAGGTTGTAGTTTCAAGACAAGAACAATCAAATCAACATGCTGAGGATAAGCTGCAGTTCTCCAGATGCTCAAAAGCTTTTGGAACTTCAAAGAGAAAGGCTGAGGAAATTAATGAGTATGGTGGTAATAAGAAACCAGAACCAGAAGAGGAAGAAGAAACTATGGAATGTTTAAAGAAGATCACTCCTGTAGGAATGGAGGCTGCAGTTGCACAACGAGGACAGTCAAATCAGCATACTAACAATAATCCAGACAAAATCTCAAAATGCTCAAAAGCTTTTGAAATTTCAAAAAAGAAAAAGGTCCAAGGAATTCATAAACATACAAAACCAAATTCAGAAATGAAACAAAACCTTCTGCTATGTTCAAAGAGAACCCCCAAACTTCCATCTAGGAAAGGAGAAGAGCCAAAGAAGCTTACTGCCTCAAACAAGAAAAGGAAATTTGAAGATGATCCCATGATTGACAATTTTGAAGAAGATGAAGAAACGCTTTTTCTTTTAAAGGCAAAGACCAGGAGCAGAGCTAGCAGAATGGATAATGTGATGGGTGTTCAACAAAATCCCCGGATGTGTCATCAGTGCTTGAAAAAGGAGAGAACAGCTTTTGTGCCTTGTACTAAATGTCCAAAAATGTACTGTTTGCGATGCATCAATCAATGGTACCCAGATATGTTGATAGAAGAAATTGCTCAAAGCTGCCCATTTTGCCGTAAAAATTGCAATTGCAATGTTTGCTTGCGTTCAAGAGGATTGATTAAGACATCTAACTGGGACATCACCAATTATGAAAAAGCTCAGTATCTGCAATATATGATTAATTTACTCCTTCCATATCTGAAACAAATTTGTCATGAACAAAGTCAAGAGGAAGAGATTGAAGCTAAAATACAAGGAAAATCTCCTTGTGAGATTGAGATACCGCAAAGTCTTTGTGTTGACAATGAACGTGTCTATTGTGACCATTGTGCTACTTCAATTATTGACCTTCATCGAAGTTGCCCCAAGTGTTCCTATGAACTCTGCCTTAGTTGTTGCCAAGAAATACGCAATGGAAGCATTACACCCCGGGATGAGATGAAGTTCCAATATGTGAATAGGGGTTATGATTATATGCATGGCGGTGACCCTCTCCCAATGTCTTGTGATTTAGAGACATCAGATGGTCATATTGAGCTATCCACTGAGTGGAATGCCAAGAATGATGGAAGTGTTAGTTGTGGTCCAGAGAAGATGGGGGGTTGTGGTGGCTCTGTACTGGAGCTGAGGCGCATCCTCCCACATGGGTGGATATCTAACTTGGAAGCCAAAGCTCATACTATGCTGAAAATTTATGAAATGGAACAAAGAACTCTTCAGCAGAAAGAAGTGGTATCAAGCTACAGCGCTATGAGAAAGGAAGCGTTTGGAGAAGCCACAAATGACAATAACATATACTGTCCAGACTTAAAAGAAGGGTTGTTGCTTTTCCAAAAGCACTGGACTAATGGTGAACCAATTATAGTTCGTGATGTTCTTGAACAGGGAACAGGTCTGAGTTGGGAGCCAATGGTCATGTGGCGAGTATTATGTGAAAATACCGTTTCAGAAATCAGTTCAAAAATGTCAGAAGTGAAGGCCATTGATTGCCTGGCTAATTGTGAGGTAGAAATTAATACACATAAGTTTTTTAAAGGTTATATAGAGGGAAGAACATACCGAAATCTATGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCATCTGATAAATTTGAAGATCTTCTGCCCCGCCATTGTGATGAGTTTATTTGCTCCTTGCCATTCCAAGAGTATACTGATCCTCGGGCTGGAATTCTTAATCTCGCTGTAAAGTTGCCAGCCCATGTCCTTAAACCTGATATGGGTCCAAAAACATATATTGCTTATGGGATTAAAGAAGAACTTGGTAGAGGAGACTCTGTAACAAAGCTTCACTGTGACATGTCTGATGCGGTGAATATTTTGACCCATACAGCTGAGGTGATGTTAACTGATGAGCAGCACTCGATTATTCCAAAGTTGAAAGAAGCGCACAAGGCACAAGATGAGAGAGAACTCTGCCCTCAAGAGAGGGTTGCTGAATGGTTGAATGGTCGACCTTGCAAAGACAACATAGAAAAGATAGAGAATAAGGAAGTCTTAGAACCCAATGATATGGAGAAGCGCCCTATTGAAATTAATGGAAAGATCTTTCGAAATAGTGTGTCCCAAGGGGCTACTTTTCCTGCTATTTCTACAGAAAACGAATCAATGGAAACAGGTTGTGCTCTATGGGATATATTTCGGAGAGAGGATACTGAAAAATTAGAAACATATCTAAGGACGCACTCAAAAGAATTTAGACATACTTACTGTTCTCCAGTTGAACAGGTTGTGCACCCAATTCATGACCAATGTTTTTATTTGACTTCTGAGCACAAGAGGAAGCTGAAGGAGGAATTTGGTGTAGAACCCTGGACTTTTGAGCAGAAACTTGGGGAGGCAGTAGTTATTCCTGCCGGATGCCCACATCAAGTCAGAAATCTCAAGTCATGCACAAAAGTTGCTGTAGACTTCGTGTCCCCAGAAAATGTCCATGAGTGTCTGCGTTTAACTAATGAGTTCCGTCAGCTCCCCAAGAACCACAAGGCTAGAGAAGATAAACTAGAGATAAAGAAGATGATAGTTTATGCCGTCGATCAAGCTGTCAAAGACTTAAAAGCTTTGTTTGAGTGCTCTTGA 2745 0.4033 MEVVVSRQEQSNQHAEDKLQFSRCSKAFGTSKRKAEEINEYGGNKKPEPEEEEETMECLKKITPVGMEAAVAQRGQSNQHTNNNPDKISKCSKAFEISKKKKVQGIHKHTKPNSEMKQNLLLCSKRTPKLPSRKGEEPKKLTASNKKRKFEDDPMIDNFEEDEETLFLLKAKTRSRASRMDNVMGVQQNPRMCHQCLKKERTAFVPCTKCPKMYCLRCINQWYPDMLIEEIAQSCPFCRKNCNCNVCLRSRGLIKTSNWDITNYEKAQYLQYMINLLLPYLKQICHEQSQEEEIEAKIQGKSPCEIEIPQSLCVDNERVYCDHCATSIIDLHRSCPKCSYELCLSCCQEIRNGSITPRDEMKFQYVNRGYDYMHGGDPLPMSCDLETSDGHIELSTEWNAKNDGSVSCGPEKMGGCGGSVLELRRILPHGWISNLEAKAHTMLKIYEMEQRTLQQKEVVSSYSAMRKEAFGEATNDNNIYCPDLKEGLLLFQKHWTNGEPIIVRDVLEQGTGLSWEPMVMWRVLCENTVSEISSKMSEVKAIDCLANCEVEINTHKFFKGYIEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFICSLPFQEYTDPRAGILNLAVKLPAHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVMLTDEQHSIIPKLKEAHKAQDERELCPQERVAEWLNGRPCKDNIEKIENKEVLEPNDMEKRPIEINGKIFRNSVSQGATFPAISTENESMETGCALWDIFRREDTEKLETYLRTHSKEFRHTYCSPVEQVVHPIHDQCFYLTSEHKRKLKEEFGVEPWTFEQKLGEAVVIPAGCPHQVRNLKSCTKVAVDFVSPENVHECLRLTNEFRQLPKNHKAREDKLEIKKMIVYAVDQAVKDLKALFECS. 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00140 914 Gene3D Cupin 477 886 - -
Seca11g00140 914 MobiDBLite consensus disorder prediction 32 56 - -
Seca11g00140 914 MobiDBLite consensus disorder prediction 129 147 - -
Seca11g00140 914 ProSiteProfiles JmjC domain profile. 609 877 IPR003347 -
Seca11g00140 914 MobiDBLite consensus disorder prediction 126 147 - -
Seca11g00140 914 ProSiteProfiles Zinc finger RING-type profile. 193 239 IPR001841 -
Seca11g00140 914 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 25 910 IPR045109 GO:0032454|GO:0033169
Seca11g00140 914 Pfam JmjC domain, hydroxylase 757 860 IPR003347 -
Seca11g00140 914 SUPERFAMILY Clavaminate synthase-like 490 909 - -
Seca11g00140 914 SMART cupin_9 590 877 IPR003347 -
Seca11g00140 914 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 189 258 IPR018866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00140 Seca-Chr11 1529814 1536044 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca11g00140 JmjC 9.3e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00140 K15601 K21989 gmx:100797860 1392.87