Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00138 ATGAAGGAGAAAGGTCCAAGAACATTTAGTGGGAGTCTTCCTCTTGGAATTGTTAATGAGACTCCTCAGATTCAAGAACAAAGGGTAAAAAGTGCTGTTGTTATTACAGATCTGAAGCCTCCTCCTGCAGACAAAATGATGGTTGAGAGAATACCTGCAAAAGATGGGTCTGTAAAGCAAATGAAGCCCCCTATAACTGCTACATCATACACAGTTGCTGCTCTCCAAAGTTCAACAAATAGCTTTAGTCAAGAATTTCTTGTTGGTGAAGGTTCTCTTGGTCGAGTTTACAAGGCTGATTTCCCAAATGGGAGGATCATGGCCATCAAGAAGATAGACAACACAACACTATCATTACAGGAGGAAGACAATTTTCTTGAAGCTGTTTCAAATATCTCACACTTGAGACACCCAAACATTGTTGCGCTAACAGGATATTGTGCAGAGCATGGGCAACGTCTTCTAGTTTATGAGTATGTAGGAAATGGAAATCTACATGACATGCTCCATTTTGCTGAAGATAGCAGTAAGGCTTTATCTTGGAATGCCCGTGTACGCATAGCACTCGGCACAGCTCGAGCTTTAGAGTACTTGCATGAAGTGTGCTTGCCTTCTGTTGTACATAGAAATTTCAAATCAGAAAATATATTACTTGATGAGGAGCTCGAGCCTCACCTGTCTGACTGTGGTTTGGCTGCTCTAACCCCAAAAACTGAGCGACAGGTTTCAACTCAAATGGTCGGTTCATTTGGTTATAGTGCTCCAGAATTTGCATTATCCGGAATTTACACTGTAAAAAGTGATGTTTACAGCTTTGGGGTGGTTATGTTGGAGCTATTGACTGGTCGTAAGCCGCTTGACAGTTCACGGGTTAGATCAGAGCAGTCACTTGTGAGGTGGGCTACTCCCCAGCTCCATGATATAGATGCCTTGGCCAAAATGGTTGATCCTGCTTTGAATGGCATGTATCCTGCAAAGTCACTGTCACGCATTGCCGATATCATTGCCCTCTGTGTTCAGCCTGAACCTGAATTTCGACCTCCCATGTCTGAGGTGGTGCAAGCATTGATACGGTTAGTGCAAAGAGCAAATGTGGTTAAACGGCGTCCCAGTGATGAATCTAGTTTCGGTCACAGAACGCCAGATTATGAGGCCATAGACATGTTATATTAG 1173 0.4331 MKEKGPRTFSGSLPLGIVNETPQIQEQRVKSAVVITDLKPPPADKMMVERIPAKDGSVKQMKPPITATSYTVAALQSSTNSFSQEFLVGEGSLGRVYKADFPNGRIMAIKKIDNTTLSLQEEDNFLEAVSNISHLRHPNIVALTGYCAEHGQRLLVYEYVGNGNLHDMLHFAEDSSKALSWNARVRIALGTARALEYLHEVCLPSVVHRNFKSENILLDEELEPHLSDCGLAALTPKTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPALNGMYPAKSLSRIADIIALCVQPEPEFRPPMSEVVQALIRLVQRANVVKRRPSDESSFGHRTPDYEAIDMLY. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00138 390 Gene3D Phosphorylase Kinase; domain 1 45 159 - -
Seca11g00138 390 PANTHER OS01G0253100 PROTEIN 57 364 - -
Seca11g00138 390 ProSiteProfiles Protein kinase domain profile. 82 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00138 390 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 47 159 - -
Seca11g00138 390 Pfam Protein kinase domain 86 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00138 390 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 160 370 - -
Seca11g00138 390 SUPERFAMILY Protein kinase-like (PK-like) 61 356 IPR011009 -
Seca11g00138 390 Gene3D Transferase(Phosphotransferase) domain 1 160 369 - -
Seca11g00138 390 CDD STKc_IRAK 88 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00138 Seca-Chr11 1492440 1497618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00138 12 390 Strubbelig Receptor Gene Family AT4G22130 76.781 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Seca11g00138 Pkinase 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00138 - - gmx:100781455 685.256