Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00135 ATGATGTGTTTTGGAGAGAACAGTAGTAGTAGTGGGCTTTGTCCTTGTCCAATCACGCCTTCATTAGTGACATGTAATCATCATCATCCAATAAATCCTAATCCTATTGAAGACACAAACACTAGTCTCTTCCTTCCCAATCCTAATCCCATGCCTGCTTGCACTACTAATAATAATAACCCCATCAACAGCACTGGATTAGGGCATTTGATGGAGATCGACCACAACAACAACAACGATGGAAGCTCCTCTTCTTCATCCGCCGTGAAGGCCAAGATCATGGCCCATCCTCACTATCACCGCCTGTTGGCAGCCTACGTCAATTGTCAAAAGATTGGGGCTCCGCCTGAAGTGGTGGGAAGGTTAGAAGAAGCATGTGCATGTGCATGTGCAGTAGCAGATGAGTGGTCAGCGAACTCCATGGGTGAGGATCCGGCGCTGGCGCTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTCATCAAGTACGAGGAACACCTCTCTAAACCCTTCCACGAAGCCATGCTCTTTCTTCAAAGGATTGACTCCCACTTCAAATCTCTCACTATTTCTTCTTCCGATTTTTCTGGATCATCAGCTTGCAATGAAGAAGTTATTGATAGGAATGAATCATCTGAAGATGTTGATGTGCACAACAACATAATAGATCCCCAGGCAGAGGACCAAGAACTGAAGGTTCAGCTTCTACGCAAGTACAGTGGATATCTAGGCAATTTGAAGCAGGAATTCATGAAGAAGAAGAAAAAAGGCAAGCTGCCTAAAGAAGCAAGACACAAATTGCTTGAATGGTGGAGCAGACACTACAAATGGCCTTACCCTTCTGAATCACAGAAGCTGGCTCTTGCAGAATCAACAGGTCTGGATCAGAAGCAAATTAACAACTGGTTTATTAATCAGAGGAAACGACACTGGAAGCCTTCTGAGGACATGCAGTTTGTGGTTGTGTATCCAAGCCATCCACACTACTATATGGACAATGTTCTGGGCAATCCCTTTCCCATGGATCTCTCCCACACAATGCTCTGA 1047 0.4518 MMCFGENSSSSGLCPCPITPSLVTCNHHHPINPNPIEDTNTSLFLPNPNPMPACTTNNNNPINSTGLGHLMEIDHNNNNDGSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKIGAPPEVVGRLEEACACACAVADEWSANSMGEDPALALDQFMEAYCEMLIKYEEHLSKPFHEAMLFLQRIDSHFKSLTISSSDFSGSSACNEEVIDRNESSEDVDVHNNIIDPQAEDQELKVQLLRKYSGYLGNLKQEFMKKKKKGKLPKEARHKLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVYPSHPHYYMDNVLGNPFPMDLSHTML. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00135 348 SMART HOX_1 252 317 IPR001356 GO:0003677
Seca11g00135 348 SMART KNOX2_2 137 190 IPR005541 GO:0003677|GO:0005634
Seca11g00135 348 ProSiteProfiles 'Homeobox' domain profile. 250 313 IPR001356 GO:0003677
Seca11g00135 348 SMART ELK_2 230 251 IPR005539 GO:0003677
Seca11g00135 348 SMART KNOX1_2 87 131 IPR005540 GO:0003677|GO:0005634
Seca11g00135 348 SUPERFAMILY Homeodomain-like 252 327 IPR009057 -
Seca11g00135 348 Pfam Homeobox KN domain 270 309 IPR008422 GO:0003677|GO:0006355
Seca11g00135 348 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 67 319 - -
Seca11g00135 348 Pfam KNOX2 domain 142 189 IPR005541 GO:0003677|GO:0005634
Seca11g00135 348 Pfam KNOX1 domain 88 127 IPR005540 GO:0003677|GO:0005634
Seca11g00135 348 ProSiteProfiles ELK domain profile. 230 250 IPR005539 GO:0003677
Seca11g00135 348 FunFam Homeobox protein knotted-1-like 2 255 317 - -
Seca11g00135 348 Pfam ELK domain 230 251 IPR005539 GO:0003677
Seca11g00135 348 ProSitePatterns 'Homeobox' domain signature. 288 311 IPR017970 GO:0000981|GO:0006355
Seca11g00135 348 Gene3D - 255 317 - -
Seca11g00135 348 CDD homeodomain 262 314 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00135 Seca-Chr11 1475583 1480745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00135 70 348 Homeobox Transcription Factor Family AT1G62360 72.165 6.19e-123 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca11g00135 KNOX2 2.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00135 - - gmx:100127401 489.574