Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00129 ATGAGTCAACTCGGTCTGATATTGCAGGAATCGCTGCGCACTGAAAGGGAAGCAGGAACCATTCTAGGTTTGTTAACGGAACAAATGGATGGTGTGGATAGAGAGCAACGGAGGAGGCGCACTCTCAAAGAACGCTTCAGATTCGCCGGAATGGGGTGTTGTGGGGCCACCTGGGTTTTCCGTCCAGTCAGGCACGAACAACAAGATGAAGAAGAAGGAGGAAGAGGAACGCAGCAGGAGCAGGAACGACTCCAGGGTCAAGATCCGGACCCGCTCTTACCCGATTGTGTGGGTCCGGGTCCGTCGGGATCGGGTATGAATCTGGCGGCGGCGTTGGCGGCGGAGCGTCAATTCCGGGGATCGCAGGAAGCGGAGGGAGAAGGAGGCACGGTGGAGACGCCGTTAAGGGTGTCGTTGATGAGGCTGTTAGAGGAAACGGAGAAAGAAATTAGAGGAGAGGTGGTGGGGAATGATTCGGTGTGTTGCGTGTGCATGGGGAGGAAGAAAGGAGCGGCGTTCATCCCATGTGGACACACTTTCTGTAGGGTGTGTTCGAGGGAACTGTGGCTGAACCGAGGAAACTGTCCCCTTTGCAATCGTTCCATTCTCGAGATTCTCGATATCTTCTGA 630 0.5492 MSQLGLILQESLRTEREAGTILGLLTEQMDGVDREQRRRRTLKERFRFAGMGCCGATWVFRPVRHEQQDEEEGGRGTQQEQERLQGQDPDPLLPDCVGPGPSGSGMNLAAALAAERQFRGSQEAEGEGGTVETPLRVSLMRLLEETEKEIRGEVVGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGNCPLCNRSILEILDIF. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00129 209 MobiDBLite consensus disorder prediction 66 100 - -
Seca11g00129 209 PANTHER OS01G0917900 PROTEIN 5 209 - -
Seca11g00129 209 SMART ring_2 161 198 IPR001841 -
Seca11g00129 209 Pfam Zinc finger, C3HC4 type (RING finger) 158 203 - -
Seca11g00129 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 208 IPR013083 -
Seca11g00129 209 CDD RING-HC 161 198 - -
Seca11g00129 209 ProSiteProfiles Zinc finger RING-type profile. 161 199 IPR001841 -
Seca11g00129 209 SUPERFAMILY RING/U-box 153 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00129 Seca-Chr11 1398708 1399337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00129 21 209 C3H Transcription Factor Family AT4G22250 55.882 7.19e-61 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00129 - - mtr:11446421 289.656