Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00126 ATGAAGCTAGAAAACTCCTCCAACGGCCAGATGTCCTTCGCCGGTGACGTTTCGCCGCCGCATCATAACGATGACGACGCCGAGGAGATATTCGTGCCGCCGCTGAATTTCGCGATGGTCGACAATGGCATTTTTAGGTCTGGCTTTCCCGATGCTGCCAACTTCGGATTCTTGAAATCCCTTCGTCTCCGTTCCGTAATATGTTTGTGCCCTGAACCGTATCCAGAAGCGACTGCGGAGTTTTTGAAGGCCAACGGAATAAGGCTTTATCAATTTGGGATCGATGGCTGTAAGGTTTGTATTTTTTTTCTCTCTTTTTCTTCATCACGCTTTGTACTCTGA 342 0.4825 MKLENSSNGQMSFAGDVSPPHHNDDDAEEIFVPPLNFAMVDNGIFRSGFPDAANFGFLKSLRLRSVICLCPEPYPEATAEFLKANGIRLYQFGIDGCKVCIFFLSFSSSRFVL. 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00126 113 PRINTS Plant and fungal dual specificity phosphatase signature 31 48 IPR020428 GO:0016791
Seca11g00126 113 PRINTS Plant and fungal dual specificity phosphatase signature 68 81 IPR020428 GO:0016791
Seca11g00126 113 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791
Seca11g00126 113 MobiDBLite consensus disorder prediction 1 28 - -
Seca11g00126 113 Gene3D Protein tyrosine phosphatase superfamily 30 109 IPR029021 -
Seca11g00126 113 Pfam Tyrosine phosphatase family 32 97 IPR004861 -
Seca11g00126 113 PANTHER TYROSINE-PROTEIN PHOSPHATASE 28 93 - -
Seca11g00126 113 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 31 100 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00126 Seca-Chr11 1373666 1377372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00126 27 98 Protein tyrosine phosphatase (PTP) family AT1G05000 71.233 2.23e-34 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00126 K18045 - gmx:100785520 162.54