Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca11g00109 | ATGTCTGTCACCGAAACCCCCGGTCTCCAACACCGTCACCCGTCGAAGCGAAAATTCGACGATGAGGAAGAAGATGTCTCTGACCTAGTTTGTGTCAGAATGAGGAAGGAAGAGGCCAAGGTGGTTAACTCGTGGTCTTCGGGTTGCGGTGGCGAGTTACAAAGATCGCACTTGCAATTCTTCGTTCGAATGATGTCAGGAGGTAACACTATTGTTATGCAGGCTTATCCGGAAGAAACCGTGAAATCTATTCACGAACGCATTCATATTATGAAAGGAATTCCCCTTTTCGAGCAGAGGTTAATTTACAGGGGAAAACAGCTTCAGTGGGAACAGACTCTCGCCGAGTGTTCCATCCAAAACGACGCCAACCTTCAACTCGTGGGTCGTATGCGCAGCACCGAACACCCCCAGGCGTGGCAGGTCATAAACGACATGGTTTCTCTCGTTTATCGTCTCTGCCGCGGCGAAACTGTTCACGATGCTTTGAAGACCGTTAAGGGCCTCATCACCAGTTACCTCAACATGACACCCAGAATCGACAACGATTCTGCCACTGGGTATTTTCAGATTTTCATGTCTTCCTCTGCCCCTGCGGTGCTGGTCATGCTCTATGTCTCCCCCTATCCAGGTAACAAGAATTGTGCTGATTCTTCTGTTAGGCATTTCTTGAATTCTTGTCGTAATACCTTGTCCAAGGCACTGCACACCCAGTGTGCGCGTGTGGTTTTGGAGTTTTGTAAATTGCTTAGGAGAGTGGGCTCTCACGACCCTTTGTATCTCTTTTGTCGGAGTACTTTTGGGTCCTTGTTGGAAACTGCTGGTATTTCCTATGCTGCTTCTGAGAGTGAAAATGTTAAAGGATCAATTTTGATTCAAGACATTTTCCCCTTTGTGCGTGAGCTTGCTAATAGCTTGTTGTCGGATTTGGATTTGAGTATGGAGACCCCCTCTGTTGCTGGGTCTTTGTTGAACGACGTTGGGGATTTTACTGCCTTCTTAATCCCTTTGAGGACTGGAATCAGGGAGCAACGAGCTCTCCAAGATTCTATGACTCACCAGAAGCGCCATAAGGACATGTTGCTCGTTGAAGAGATTGAATACCTTCATCTCTTGTACATTGAGTTATTGAACAAAATTGATCAGTGCCTTTCAAAATTGGAGAAAAGTTTGGCTGGCCAGGAAATGATGCAAGGGGATAATCTTTGTCCTGCATGGTCTCAGTATCTTTTCATTTTGAAGGAATTGTATCAAATTTCTAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGAGTGTTTTGATGCGTCAAAAGAATGTGCTGTGTCAACTCATCGTTCAATATGCAAAGAGGACTGATGAGCATCAGTGGATTCTTAAGCACAGGTCTGTCACGAATTTTGAGTCTAGGAGGCATTTGGCAATGATGATGTTCCCAGAGGTAAAAGAAGATTATGAGGACCTGCATGAGATGCTTATTGACAGGTCTCACTTACTGACTGAATCTTTTGAATACATAGCACGAGCTGAGCCCGAATCTCTGCATGCTGGCTTATTTATGGAATTCAAAAATGAGGAAGCCACTGGCCCAGGTGTACTGAGGGAGTGGTTTGTTTTGGTATGTCAAGCAATATTCAATCCACAAAATGCTCTTTTTGTGGCATGCCCAACTGATCGAAGGAGATTTTTCCCTAATCCTGGTCAAATGCTATCCAAACTGACATGTTCAAATTCACATTGTTTGAAATCGTTAAAGCATTTCTGGATATTGAAGTTTAGCTTATCCTTTGTCTACTTGTTTGAAGCTTCAAAGGTACATCCTCTGCACCTTGAGTACTTCAACTTCTCTGGTCGAGTTATTGCATTAGCTTTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCTGGAAACTATATTACTTTAGAAGATATAAAGGATGCAGATCCTTGCCTGTATACTAGCTGCAAGCAAATATTGGAGATGGATTCTGATTTCATTGATTCAGATGCATTAGGATTGACGTTTGTTAGAGAGGTTGAGGAATTAGGACACAGGAAAGTGGTTGAACTCTGCCCTGGTGGGAAAAACATTGTAGTAAATAGTATGAACAGGGAGAAGTATGTTGATCTTCTTATACAGGATCGTTTTGTAACATCCATATCTGAGCAAGTGTCACATTTTGCCAAAGGTTTTGCTGATATTCTTTCAAACTCAAAGCTCCAGCAGTTCTTCTTTCAAAGTTTAGAGCTTGAAGATCTTGATTGGATGTTGCATGGGAGTGAAGATACCATTTCTGTTGAAGATTGGAAAGCACACACTGAGTATAATGGCTATAAAGAGACAGATATTCAGATAACTTGGTTTTGGGAGATTGTGGGGAGAATGACAGCGGAACAGAGGAAGGTTCTTCTATTCTTTTGGACATCTGTGAAATATTTACCAGTTGAAGGTTTCCGTGGTTTGGCTTCCCGTCTCTACATTTACAAATCCCTTGAACCTGGTGATCACCTGCCTTCATCTCACACATGCTTTTACCGGCTGTGTTTCCCAGCGTATTCATCTATGGCTGTCATGCAAGATCGTCTTGATGTCATTACTCAAGAACATGTTGGCTGCAGTTTTGGTACTTGGTGA | 2658 | 0.4304 | MSVTETPGLQHRHPSKRKFDDEEEDVSDLVCVRMRKEEAKVVNSWSSGCGGELQRSHLQFFVRMMSGGNTIVMQAYPEETVKSIHERIHIMKGIPLFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQVINDMVSLVYRLCRGETVHDALKTVKGLITSYLNMTPRIDNDSATGYFQIFMSSSAPAVLVMLYVSPYPGNKNCADSSVRHFLNSCRNTLSKALHTQCARVVLEFCKLLRRVGSHDPLYLFCRSTFGSLLETAGISYAASESENVKGSILIQDIFPFVRELANSLLSDLDLSMETPSVAGSLLNDVGDFTAFLIPLRTGIREQRALQDSMTHQKRHKDMLLVEEIEYLHLLYIELLNKIDQCLSKLEKSLAGQEMMQGDNLCPAWSQYLFILKELYQISKLYDGAEEKLWSVLMRQKNVLCQLIVQYAKRTDEHQWILKHRSVTNFESRRHLAMMMFPEVKEDYEDLHEMLIDRSHLLTESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFVLVCQAIFNPQNALFVACPTDRRRFFPNPGQMLSKLTCSNSHCLKSLKHFWILKFSLSFVYLFEASKVHPLHLEYFNFSGRVIALALMHRVQVGIVFDRVFFLQLAGNYITLEDIKDADPCLYTSCKQILEMDSDFIDSDALGLTFVREVEELGHRKVVELCPGGKNIVVNSMNREKYVDLLIQDRFVTSISEQVSHFAKGFADILSNSKLQQFFFQSLELEDLDWMLHGSEDTISVEDWKAHTEYNGYKETDIQITWFWEIVGRMTAEQRKVLLFFWTSVKYLPVEGFRGLASRLYIYKSLEPGDHLPSSHTCFYRLCFPAYSSMAVMQDRLDVITQEHVGCSFGTW. | 886 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca11g00109 | 885 | FunFam | E3 ubiquitin-protein ligase UPL5 isoform A | 645 | 727 | - | - | |
| Seca11g00109 | 885 | ProSiteProfiles | HECT domain profile. | 510 | 885 | IPR000569 | GO:0004842 | |
| Seca11g00109 | 885 | PANTHER | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE | 59 | 883 | - | - | |
| Seca11g00109 | 885 | SUPERFAMILY | Ubiquitin-like | 59 | 146 | IPR029071 | - | |
| Seca11g00109 | 885 | ProSiteProfiles | Ubiquitin domain profile. | 58 | 134 | IPR000626 | GO:0005515 | |
| Seca11g00109 | 885 | PRINTS | Ubiquitin signature | 111 | 132 | IPR019956 | - | |
| Seca11g00109 | 885 | PRINTS | Ubiquitin signature | 90 | 110 | IPR019956 | - | |
| Seca11g00109 | 885 | PRINTS | Ubiquitin signature | 69 | 89 | IPR019956 | - | |
| Seca11g00109 | 885 | SMART | ubq_7 | 58 | 130 | IPR000626 | GO:0005515 | |
| Seca11g00109 | 885 | SMART | hect_3 | 508 | 883 | IPR000569 | GO:0004842 |
Showing 1 to 10 of 21 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca11g00109 | - | - | gmx:100789233 | 1458.74 |
Showing 1 to 1 of 1 entries