Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00109 ATGTCTGTCACCGAAACCCCCGGTCTCCAACACCGTCACCCGTCGAAGCGAAAATTCGACGATGAGGAAGAAGATGTCTCTGACCTAGTTTGTGTCAGAATGAGGAAGGAAGAGGCCAAGGTGGTTAACTCGTGGTCTTCGGGTTGCGGTGGCGAGTTACAAAGATCGCACTTGCAATTCTTCGTTCGAATGATGTCAGGAGGTAACACTATTGTTATGCAGGCTTATCCGGAAGAAACCGTGAAATCTATTCACGAACGCATTCATATTATGAAAGGAATTCCCCTTTTCGAGCAGAGGTTAATTTACAGGGGAAAACAGCTTCAGTGGGAACAGACTCTCGCCGAGTGTTCCATCCAAAACGACGCCAACCTTCAACTCGTGGGTCGTATGCGCAGCACCGAACACCCCCAGGCGTGGCAGGTCATAAACGACATGGTTTCTCTCGTTTATCGTCTCTGCCGCGGCGAAACTGTTCACGATGCTTTGAAGACCGTTAAGGGCCTCATCACCAGTTACCTCAACATGACACCCAGAATCGACAACGATTCTGCCACTGGGTATTTTCAGATTTTCATGTCTTCCTCTGCCCCTGCGGTGCTGGTCATGCTCTATGTCTCCCCCTATCCAGGTAACAAGAATTGTGCTGATTCTTCTGTTAGGCATTTCTTGAATTCTTGTCGTAATACCTTGTCCAAGGCACTGCACACCCAGTGTGCGCGTGTGGTTTTGGAGTTTTGTAAATTGCTTAGGAGAGTGGGCTCTCACGACCCTTTGTATCTCTTTTGTCGGAGTACTTTTGGGTCCTTGTTGGAAACTGCTGGTATTTCCTATGCTGCTTCTGAGAGTGAAAATGTTAAAGGATCAATTTTGATTCAAGACATTTTCCCCTTTGTGCGTGAGCTTGCTAATAGCTTGTTGTCGGATTTGGATTTGAGTATGGAGACCCCCTCTGTTGCTGGGTCTTTGTTGAACGACGTTGGGGATTTTACTGCCTTCTTAATCCCTTTGAGGACTGGAATCAGGGAGCAACGAGCTCTCCAAGATTCTATGACTCACCAGAAGCGCCATAAGGACATGTTGCTCGTTGAAGAGATTGAATACCTTCATCTCTTGTACATTGAGTTATTGAACAAAATTGATCAGTGCCTTTCAAAATTGGAGAAAAGTTTGGCTGGCCAGGAAATGATGCAAGGGGATAATCTTTGTCCTGCATGGTCTCAGTATCTTTTCATTTTGAAGGAATTGTATCAAATTTCTAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGAGTGTTTTGATGCGTCAAAAGAATGTGCTGTGTCAACTCATCGTTCAATATGCAAAGAGGACTGATGAGCATCAGTGGATTCTTAAGCACAGGTCTGTCACGAATTTTGAGTCTAGGAGGCATTTGGCAATGATGATGTTCCCAGAGGTAAAAGAAGATTATGAGGACCTGCATGAGATGCTTATTGACAGGTCTCACTTACTGACTGAATCTTTTGAATACATAGCACGAGCTGAGCCCGAATCTCTGCATGCTGGCTTATTTATGGAATTCAAAAATGAGGAAGCCACTGGCCCAGGTGTACTGAGGGAGTGGTTTGTTTTGGTATGTCAAGCAATATTCAATCCACAAAATGCTCTTTTTGTGGCATGCCCAACTGATCGAAGGAGATTTTTCCCTAATCCTGGTCAAATGCTATCCAAACTGACATGTTCAAATTCACATTGTTTGAAATCGTTAAAGCATTTCTGGATATTGAAGTTTAGCTTATCCTTTGTCTACTTGTTTGAAGCTTCAAAGGTACATCCTCTGCACCTTGAGTACTTCAACTTCTCTGGTCGAGTTATTGCATTAGCTTTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCTGGAAACTATATTACTTTAGAAGATATAAAGGATGCAGATCCTTGCCTGTATACTAGCTGCAAGCAAATATTGGAGATGGATTCTGATTTCATTGATTCAGATGCATTAGGATTGACGTTTGTTAGAGAGGTTGAGGAATTAGGACACAGGAAAGTGGTTGAACTCTGCCCTGGTGGGAAAAACATTGTAGTAAATAGTATGAACAGGGAGAAGTATGTTGATCTTCTTATACAGGATCGTTTTGTAACATCCATATCTGAGCAAGTGTCACATTTTGCCAAAGGTTTTGCTGATATTCTTTCAAACTCAAAGCTCCAGCAGTTCTTCTTTCAAAGTTTAGAGCTTGAAGATCTTGATTGGATGTTGCATGGGAGTGAAGATACCATTTCTGTTGAAGATTGGAAAGCACACACTGAGTATAATGGCTATAAAGAGACAGATATTCAGATAACTTGGTTTTGGGAGATTGTGGGGAGAATGACAGCGGAACAGAGGAAGGTTCTTCTATTCTTTTGGACATCTGTGAAATATTTACCAGTTGAAGGTTTCCGTGGTTTGGCTTCCCGTCTCTACATTTACAAATCCCTTGAACCTGGTGATCACCTGCCTTCATCTCACACATGCTTTTACCGGCTGTGTTTCCCAGCGTATTCATCTATGGCTGTCATGCAAGATCGTCTTGATGTCATTACTCAAGAACATGTTGGCTGCAGTTTTGGTACTTGGTGA 2658 0.4304 MSVTETPGLQHRHPSKRKFDDEEEDVSDLVCVRMRKEEAKVVNSWSSGCGGELQRSHLQFFVRMMSGGNTIVMQAYPEETVKSIHERIHIMKGIPLFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQVINDMVSLVYRLCRGETVHDALKTVKGLITSYLNMTPRIDNDSATGYFQIFMSSSAPAVLVMLYVSPYPGNKNCADSSVRHFLNSCRNTLSKALHTQCARVVLEFCKLLRRVGSHDPLYLFCRSTFGSLLETAGISYAASESENVKGSILIQDIFPFVRELANSLLSDLDLSMETPSVAGSLLNDVGDFTAFLIPLRTGIREQRALQDSMTHQKRHKDMLLVEEIEYLHLLYIELLNKIDQCLSKLEKSLAGQEMMQGDNLCPAWSQYLFILKELYQISKLYDGAEEKLWSVLMRQKNVLCQLIVQYAKRTDEHQWILKHRSVTNFESRRHLAMMMFPEVKEDYEDLHEMLIDRSHLLTESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFVLVCQAIFNPQNALFVACPTDRRRFFPNPGQMLSKLTCSNSHCLKSLKHFWILKFSLSFVYLFEASKVHPLHLEYFNFSGRVIALALMHRVQVGIVFDRVFFLQLAGNYITLEDIKDADPCLYTSCKQILEMDSDFIDSDALGLTFVREVEELGHRKVVELCPGGKNIVVNSMNREKYVDLLIQDRFVTSISEQVSHFAKGFADILSNSKLQQFFFQSLELEDLDWMLHGSEDTISVEDWKAHTEYNGYKETDIQITWFWEIVGRMTAEQRKVLLFFWTSVKYLPVEGFRGLASRLYIYKSLEPGDHLPSSHTCFYRLCFPAYSSMAVMQDRLDVITQEHVGCSFGTW. 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00109 885 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 645 727 - -
Seca11g00109 885 ProSiteProfiles HECT domain profile. 510 885 IPR000569 GO:0004842
Seca11g00109 885 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 59 883 - -
Seca11g00109 885 SUPERFAMILY Ubiquitin-like 59 146 IPR029071 -
Seca11g00109 885 ProSiteProfiles Ubiquitin domain profile. 58 134 IPR000626 GO:0005515
Seca11g00109 885 PRINTS Ubiquitin signature 111 132 IPR019956 -
Seca11g00109 885 PRINTS Ubiquitin signature 90 110 IPR019956 -
Seca11g00109 885 PRINTS Ubiquitin signature 69 89 IPR019956 -
Seca11g00109 885 SMART ubq_7 58 130 IPR000626 GO:0005515
Seca11g00109 885 SMART hect_3 508 883 IPR000569 GO:0004842
Seca11g00109 885 Gene3D Hect, E3 ligase catalytic domain 768 883 - -
Seca11g00109 885 Gene3D - 52 148 - -
Seca11g00109 885 MobiDBLite consensus disorder prediction 1 21 - -
Seca11g00109 885 Pfam Ubiquitin family 61 132 IPR000626 GO:0005515
Seca11g00109 885 CDD HECTc 489 883 IPR000569 GO:0004842
Seca11g00109 885 Pfam HECT-domain (ubiquitin-transferase) 539 877 IPR000569 GO:0004842
Seca11g00109 885 SUPERFAMILY Hect, E3 ligase catalytic domain 485 871 IPR035983 GO:0004842
Seca11g00109 885 Gene3D Hect, E3 ligase catalytic domain 645 727 - -
Seca11g00109 885 FunFam E3 ubiquitin-protein ligase UPL5 769 884 - -
Seca11g00109 885 Gene3D Hect, E3 ligase catalytic domains 490 758 - -
Seca11g00109 885 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 52 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00109 Seca-Chr11 1243123 1247554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00109 58 132 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.667 6.06e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00109 - - gmx:100789233 1458.74