Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00100 ATGGTTTCTGCGGAGAATGATTCTGAGTCCAATTCCAATGCTCATTCGACCATTTCAAACAAAATTCAGCGACAAATTGGGAGATCCATGCGAACCATACGCTCCAATTTGTTCCAACACTCTGCCTCCCAAATGGATTCCCACAACTTGACCAATACCCTCATCGACCTCGCCTCCCGAAACAACAAACCCCTTAAAGTCGATGAACAACTTCTAGAACTTTCTCAAGCTTTCAGCGATTTCTCCGCTTGCAGCAGCGATATCTCCGGCGAGCTCCAGAGGCTCGCCACCGTCTCTTCCTCTGAAGACAACCACGCTGCTGCTGCTGATGCTGACGTGGACCACGAACTCCAACCCGAGCCCTGCCTAGGGTTCACCGAGATTATTGAAAGTATTTCCCCCGAGGATCTTCAGCCGACAGTGAAGATCTGCGTCGACGGTCTCCAATCGCCTTCGGTCGCCGTGAAGCGATCAGCGGCGGCCAAGCTGAGGCTGTTGGCCAAGAACCGGGCGGATAACCGTGCTCTGATCGGCGAGTCCGGTGCCATTCCTGCTTTGGTTTCATTGCTCCGGTGTAGTGATCCGTGGACGCAGGAACACGCTGTGACGGCGTTGCTGAATCTGTCTCTGCTCGAAGACAACAAGGTGCTGATAACGAACGCAGGTGCTGTGAAGTCTCTGGTTTATGTGCTCAAGACGGGGACGGAGACTTCGAAGCAGAACGCGGCTTGTGCGCTTTTGAGCCTTGCCATGGTGGAGGAAAACAAGAGCTCCATCGGTGCTTGCGGGGCCATACCACCGCTTGTTTCGTTGCTGTTGAGTGGTTCCAACAGGGGGAAGAAGGATGCACTCACCACGCTTTACAAGCTGTGTTCGGTGAAGCAGAACAAGGAGAGGGCGGTGAGCGCTGGAGTGGTGAAGCCACTGGTGGAGCTGGTGGCGGAGGAAGGGACTGGTATGGCCGATAAGGCAATGGTGGTGCTGAATAGCTTGGCGGGGATTCAAGAGGGAAGGGATGCAATTGTGGAACAGGGTGGAATAGCTGCTCTTGTAGAAGCAATTGAAGATGGGTCGGTGAAGGGAAAGGAATTTGCTGTTTTGACTCTTGTGCAGCTATGTGCTGATAGCGTTAGGAACAGAGGAATGCTTGTGAGGGAAGGTGGGATTCCTCCTCTCGTTGCTCTCTCCCAGACTGGGACTGTTCGAGCTAAGCACAAGGCTGAGACACTCCTTGGATACCTGAGAGAATCAAGACAAGAAGCATCCTCTTCAAGTCCTTAG 1281 0.5316 MVSAENDSESNSNAHSTISNKIQRQIGRSMRTIRSNLFQHSASQMDSHNLTNTLIDLASRNNKPLKVDEQLLELSQAFSDFSACSSDISGELQRLATVSSSEDNHAAAADADVDHELQPEPCLGFTEIIESISPEDLQPTVKICVDGLQSPSVAVKRSAAAKLRLLAKNRADNRALIGESGAIPALVSLLRCSDPWTQEHAVTALLNLSLLEDNKVLITNAGAVKSLVYVLKTGTETSKQNAACALLSLAMVEENKSSIGACGAIPPLVSLLLSGSNRGKKDALTTLYKLCSVKQNKERAVSAGVVKPLVELVAEEGTGMADKAMVVLNSLAGIQEGRDAIVEQGGIAALVEAIEDGSVKGKEFAVLTLVQLCADSVRNRGMLVREGGIPPLVALSQTGTVRAKHKAETLLGYLRESRQEASSSSP. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00100 426 FunFam U-box domain-containing protein 4 127 279 - -
Seca11g00100 426 Pfam Armadillo/beta-catenin-like repeat 172 209 IPR000225 GO:0005515
Seca11g00100 426 Pfam Armadillo/beta-catenin-like repeat 254 292 IPR000225 GO:0005515
Seca11g00100 426 Gene3D - 239 425 IPR011989 -
Seca11g00100 426 SMART arm_5 170 210 IPR000225 GO:0005515
Seca11g00100 426 SMART arm_5 334 374 IPR000225 GO:0005515
Seca11g00100 426 SMART arm_5 211 251 IPR000225 GO:0005515
Seca11g00100 426 SMART arm_5 376 416 IPR000225 GO:0005515
Seca11g00100 426 SMART arm_5 252 292 IPR000225 GO:0005515
Seca11g00100 426 Gene3D - 38 238 IPR011989 -
Seca11g00100 426 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 181 223 IPR000225 GO:0005515
Seca11g00100 426 PANTHER U BOX DOMAIN-CONTAINING 108 414 - -
Seca11g00100 426 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 304 346 IPR000225 GO:0005515
Seca11g00100 426 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 263 305 IPR000225 GO:0005515
Seca11g00100 426 SUPERFAMILY ARM repeat 138 415 IPR016024 -
Seca11g00100 426 FunFam U-box domain-containing protein 4 280 421 - -
Seca11g00100 426 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00100 Seca-Chr11 1125833 1128960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00100 136 419 U-box Gene Family AT2G23140 50.352 6.67e-82 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00100 - - gmx:100792402 603.208