Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00097 ATGCAAATGTCTCAGAAGCACCCAAGTTCAGCTGGTATCCACTTCTATCACCCTCACCAGCCTGTGCAAGGCATTTATCAAGTATTACAAAGCAAAAGATGCCGTGATACCCATGGTAATAGCAGCCAGGGAACTAATGTTTCTATTGAAACCTGCAAGGAGCAATATTTCACCCTGGAATCATGCCCATCAGTCACTGGTTTCATGGAATGTGATTCCCCTTCCTATGCCAGCGTATCATCGAACAGGAGTCCATTCTCTTCACAAGATTCTCAGTCATGGTATTCAGATCATCACCAGTCATCTGACAACACCTGTGGATCACCAATTAGCGGGTTGTCAAGTGTTGATGATGGGAATGAATTGAAGCACAAACTTAGAGAACTGGAGATTTCACTGTTGGGGCCTGATGAATCAGATATTGTTGACAGTTGTGGCTGCTGTGTTGAGGGTGGCCTCCACCGAGCATCTCAATCAGCAAAATATGATTGGGATCGGATTGCAGAAAATATTTCAAAGCTTGACTTGAAAGAAGTCCTCATGCTATGTGCACAGGCTGTGTCTGATGAAGATATTCCAACAGCAAGAGGCTGGATGGATAATGTATTGGTGAAGATGGTATCAGTTGCTGGAGATCCATCCCAAAGGTTGGGTGCTTACTTGTTGGAGGGACTTAGAGCAAGGTTGGAATCATCAGGGAGTCTGATCTACAAGACCTTGAAGTGTGAACAACCAACAAGCCAAGAACTAATGAGTTACATGCACATCCTATATCAGATTTGTCCATATTGGAAGTTTGCATATGTATCTGCAAACGCTGTCATTGCAGAAGCAATGGCAATTGAATCCAGGATTCATATAATTGATTTCCAAATTACACAGGGCACACAGTGGCATTTACTTATCCAGGCTCTTGCACACAGGCCTGGTGGACCCCCTTTTGTTCGGATAACTGGTGTTGATGATTCCCAATCATTTCACGCTAGGGGTGGAGGACTTGAGATTGTAGGAGCACGGCTTTCAGATTTTGCCAGGTCTTGCGGGGTTCCATTTGAGTTCCATTGTGCTGCAATGTCTGGCTGTGAGGTTCAACGAGAAAATCTTGGAGTTAGACCTGGGGAAGCTCTGGCTGTAAATTTTCCTTTTGTTTTGCATCACATGCCAGATGAGAGTGTGAGCATAGAGAATCATCGAGACAGACTGTTGAGATTGGTTAAGAGCTTGTCTCCAAAGGTTGTTACCCTTGTTGAGCAAGAATCCAACACCAACACTTCACCTTTTTTTCACAGGTTTGTTGAGACCCTGGATTATTATACAGCTATGTTTGAATCAATAGATGTGGCTTGCCCCAGAGATGATAAGAAGCGGATTAGTGCAGAGCAGCACTGTGTGGCAAGAGACATTGTCAACATGATAGCCTGTGAGGGGATTGAGAGGGTGGAAAGGCATGAACTTTTTGGAAAGTGGAGGTTAAGATTTTCCATGGCTGGATTTAAACAATGCCCATTGAGTTCTTCAGTGATGGCTGCTGCCCAAAATCTCTTGAAGAACTTCAATCAAAACTATAGGCTTGAACAGAGAGATGGTGCTCTCTGCCTTGGTTGGATGAAGAGAGCTATGGCCACCTCTTCTGCTTGGAGGTGA 1644 0.444 MQMSQKHPSSAGIHFYHPHQPVQGIYQVLQSKRCRDTHGNSSQGTNVSIETCKEQYFTLESCPSVTGFMECDSPSYASVSSNRSPFSSQDSQSWYSDHHQSSDNTCGSPISGLSSVDDGNELKHKLRELEISLLGPDESDIVDSCGCCVEGGLHRASQSAKYDWDRIAENISKLDLKEVLMLCAQAVSDEDIPTARGWMDNVLVKMVSVAGDPSQRLGAYLLEGLRARLESSGSLIYKTLKCEQPTSQELMSYMHILYQICPYWKFAYVSANAVIAEAMAIESRIHIIDFQITQGTQWHLLIQALAHRPGGPPFVRITGVDDSQSFHARGGGLEIVGARLSDFARSCGVPFEFHCAAMSGCEVQRENLGVRPGEALAVNFPFVLHHMPDESVSIENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFHRFVETLDYYTAMFESIDVACPRDDKKRISAEQHCVARDIVNMIACEGIERVERHELFGKWRLRFSMAGFKQCPLSSSVMAAAQNLLKNFNQNYRLEQRDGALCLGWMKRAMATSSAWR. 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00097 547 ProSiteProfiles GRAS family profile. 167 547 IPR005202 -
Seca11g00097 547 Coils Coil 508 528 - -
Seca11g00097 547 Pfam GRAS domain family 176 547 IPR005202 -
Seca11g00097 547 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 117 540 IPR005202 -
Seca11g00097 547 MobiDBLite consensus disorder prediction 80 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00097 Seca-Chr11 1105369 1109054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00097 1 547 GRAS Transcription Factor Family AT4G17230 59.307 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca11g00097 GRAS 1e-128 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00097 - - gmx:100776109 915.22