Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00076 ATGGCTGAATCTGACAACGAGTCAGGAGGTAACCGCAATGAAGGAGGTGGGTGCAGAGAACAGGACAGGCTTCTTCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCTTTACCAGCGAACGCAAAGATCTCAAAGGAAGCAAAGGAGACTATGCAAGAGTGTGTATCAGAGTTCATCAGTTTCATAACAGGGGAGGCATCTGACAAGTGCCAGAAAGAGAAGAGGAAGACAATCAACGGTGATGATCTTCTATGGGCTATGACCACGCTGGGGTTTGAAGAGTATGTGGAGCCTCTCAAGGTTTACCTCCAAAAGTATAGGGAATTGGAAGGAGAGAAGAATAATGCTATCATTGGGAGTGGGAGGCAGCAGGGTGGTGATGCTTCGTCAATGCCATCATCATCCACTATGATGATGACAGATCACCTTATGTATGCATCTGCTAATGTCTGGAAGAATTAA 465 0.4645 MAESDNESGGNRNEGGGCREQDRLLPIANVSRIMKKALPANAKISKEAKETMQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYRELEGEKNNAIIGSGRQQGGDASSMPSSSTMMMTDHLMYASANVWKN. 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00076 154 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 124 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca11g00076 154 Gene3D Histone, subunit A 14 143 IPR009072 GO:0046982
Seca11g00076 154 MobiDBLite consensus disorder prediction 1 22 - -
Seca11g00076 154 SUPERFAMILY Histone-fold 21 122 IPR009072 GO:0046982
Seca11g00076 154 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca11g00076 154 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Seca11g00076 154 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Seca11g00076 154 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Seca11g00076 154 FunFam Nuclear transcription factor Y subunit B-3 13 138 - -
Seca11g00076 154 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00076 Seca-Chr11 951168 951632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00076 1 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.600 1.86e-71 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca11g00076 CBFD_NFYB_HMF 6.5e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00076 K08065 - gmx:100778034 199.519