Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00074 ATGAACATGAGGCAGCAGATAGGAGGAGGAGGAGATCAGAACAACCAATCAGAAGATCAGAATGAGTGCATGGTGAGGGAGCAAGACCGTTTCATGCCAATTGCAAATGTGATTAGGATAATGCGCAAGATCCTACCGCCACATGCCAAGATCTCTGATGATGCTAAAGAAACAATCCAAGAGTGTGTCTCTGAGTACATCAGCTTCATTACTGGCGAGGCCAATGAGCGTTGTCAGAGGGAGCAGCGCAAGACCATCACTGCAGAGGATGTCCTGTGGGCTATGAGCAAGCTTGGCTTTGATGATTACATTGAACCTCTCACAATGTACCTTCACCGATACCGTGAGCTGGAGGGTGACCGTACCTCCATGAGGGCTGAACCACTCGGGAAGAGGACTGTCGAGTATGGAACTCTTGGTGCTGCTTTTGTCCCACCATTTCATCATCACATTGGCCATCCAAATGGGTATTTTGGTGGTGCAGCCATGGGGACTTACATGAGGGACAATGCACCAAATGCTGCTGCTGCTGCAGGGTCATCTCATCAGGCTGCACTCACAAATGCTGAACCAAATGGTCAATATAAATGA 591 0.4873 MNMRQQIGGGGDQNNQSEDQNECMVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRAEPLGKRTVEYGTLGAAFVPPFHHHIGHPNGYFGGAAMGTYMRDNAPNAAAAAGSSHQAALTNAEPNGQYK. 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00074 196 MobiDBLite consensus disorder prediction 1 21 - -
Seca11g00074 196 FunFam Nuclear transcription factor Y subunit B-6 20 136 - -
Seca11g00074 196 Gene3D Histone, subunit A 18 136 IPR009072 GO:0046982
Seca11g00074 196 SUPERFAMILY Histone-fold 28 125 IPR009072 GO:0046982
Seca11g00074 196 MobiDBLite consensus disorder prediction 1 23 - -
Seca11g00074 196 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Seca11g00074 196 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Seca11g00074 196 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Seca11g00074 196 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 12 173 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca11g00074 196 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Seca11g00074 196 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00074 Seca-Chr11 931797 932387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00074 12 160 CCAAT-HAP3 Transcription Factor Family AT5G47670 67.665 2.21e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca11g00074 CBFD_NFYB_HMF 4.9e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00074 K08065 - gmx:100194424 284.263