Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00069 ATGAAACGCTCAGGCGATGACGTGGCTGTAACCGCAACGAAGCCAGTGTTCCTAACCAAAGCCCAGCGCGAGCAGTTGGCCCTTCAACGCCGTCACGAAGAAATCGCCGAGCAGAAGCGCCGCCAGGAACAGATCCTTTCTGGTAACCGCCCTTCTGATCCCAAACCCTCCTCTGAATCCGACCGCCGCGACCGGGATAGGGATAGAGATAGGGATAGGGATAGAGATAGAGATAGGGATAGGGATAGAGACAGGGAAAGAGACCGTGACCGTGACCGTGACAGGGCCCGCGAAACTGAACGGCGCAACCGAGAGAGGGAGCGCGAAGAAGAGAGTAAGGCTCGCGAGCGTGCTCGCTTGGAGAAATTGGCGGAGCGGGAGCGCGAGAAAGAGCTGGATGCCATCAAGGAGCAGTACCTTGGCTCCAAGAAGCCTAAGAAACGGGTTATCAAGCCTAGCGAGAAGTTTCGCTTCTCGTTCGATTGGGAAAACACCGAGGACACGTCCCGCGACATGAATTCCCTTTACCAGAACCCTCACGAGGCTCAGCTTCTGTTCGGGCGAGGGTTCCGGGCGGGGATGGACCGCCGCGAGCAGAAGAAGCTGGCTGCCAAGAACGAGAAGGAGATGCGAGAGCAAATCCGGAAGAAGGACGGAGTGGAGGAGAAGCCGGAGGAGGCGGACGCGCAGCGGCGGAAGGAGGCTGCTGCTGATCTGTACGACACCTTTGATATGAGGGTGGACCGCCATTGGAGTGAGAAGAAGCTGGAAGAGATGACGGAGAGGGATTGGCGTATCTTCAGGGAGGACTTCAACATCTCCTACAAGGGTTCCAAGATTCCTCGCCCCATGCGTAGCTGGATTGAGAGCAAGTTGAGCAATGAGCTCTTGAAGGCTGTGGAGAAGGCTGGTTACAAGACCCCATCTCCCATTCAGATGGCAGCTATTCCCCTTGGCTTGCAGCAGCGTGATGTAATTGGCATTGCTGAGACTGGTTCCGGGAAGACTGCTGCATTTGTTCTTCCCATGTTGAGTTACATCACTAGGCTTCCTCCCATGAGTGAGGAGAACGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCACCCACTCGTGAGCTTGCACAGCAGATTGAGGATGAGACTGTTAAGTTTGCTCAGTATCTGGGCATCAAAGTGGTTTCCATTGTTGGTGGACAGTCCATTGAGGAGCAAGGGTTTAAGATAAGGCAAGGCTGTGAAATTGTGATTGCCACTCCCGGTCGTTTGATTGATTGCTTGGAGCGACGCTATGCTGTTCTCAACCAGTGCAATTATGTTGTTCTTGATGAGGCTGACCGTATGATTGATATGGGGTTTGAGCCACAGGTTATGGGTGTGCTGGATGCCATGCCTTCCAGCAATCTGAAACCTGAGAATGAAGATGAGGAGCTTGACGAGAAGAAGATTTACAGGACCACTTATATGTTTAGTGCCACCATGCCACCCGCCGTGGAGAGGCTTGCTAGGAAATATTTAAGGAACCCTGTTGTGGTAACCATAGGTACTGCTGGAAAAGCAACTGACTTGATCAGCCAGCATGTCATCATGATGAAGGAATCTGAGAAATTTCCTAAGCTTCAGAGATTACTTGATGAGCTTAATGACAAGACTGCAATTGTATTTGTTAACACCAAGAAGAATGCTGATATGGTTGCCAAAAATTTGGATAAGGAAGGCTATCGTGTGACTACTTTGCATGGAGGAAAATCGCAGGAGCAGAGGGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTTCTCGTAGCAACTGATGTAGCTGGACGTGGGATAGACATACCTGATGTGGCTCATGTCATCAACTATGATATGCCTGGGAATATTGAAATGTACACTCACCGTATTGGGCGTACTGGTCGTGCAGGAAAGACAGGTGTGGCTACAACCTTCCTGACTCTTCATGACACTGATGTCTTTTATGACCTCAAACAGATGCTCATTCAAAGTAATAGTCCTGTTCCACCTGAATTGGCAAGGCATGAAGCTTCAAAATTCAAGCCAGGAACTATTCCTGACAGACCACCTAGACGCAATGACACTGTTTTTGCGCATTAG 2118 0.5061 MKRSGDDVAVTATKPVFLTKAQREQLALQRRHEEIAEQKRRQEQILSGNRPSDPKPSSESDRRDRDRDRDRDRDRDRDRDRDRDRERDRDRDRDRARETERRNREREREEESKARERARLEKLAEREREKELDAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKDGVEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWIESKLSNELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFPKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH. 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00069 705 CDD DEADc_DDX23 296 512 - -
Seca11g00069 705 MobiDBLite consensus disorder prediction 196 233 - -
Seca11g00069 705 Pfam Helicase conserved C-terminal domain 535 643 IPR001650 -
Seca11g00069 705 Coils Coil 529 549 - -
Seca11g00069 705 CDD SF2_C_DEAD 523 652 - -
Seca11g00069 705 SMART helicmild6 562 643 IPR001650 -
Seca11g00069 705 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 220 682 - -
Seca11g00069 705 FunFam probable ATP-dependent RNA helicase DDX23 246 515 - -
Seca11g00069 705 Coils Coil 18 38 - -
Seca11g00069 705 Gene3D - 246 515 IPR027417 -
Seca11g00069 705 MobiDBLite consensus disorder prediction 25 46 - -
Seca11g00069 705 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 285 313 IPR014014 GO:0003724
Seca11g00069 705 MobiDBLite consensus disorder prediction 55 144 - -
Seca11g00069 705 Pfam DEAD/DEAH box helicase 310 500 IPR011545 GO:0003676|GO:0005524
Seca11g00069 705 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 440 448 IPR000629 -
Seca11g00069 705 MobiDBLite consensus disorder prediction 680 705 - -
Seca11g00069 705 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 538 682 IPR001650 -
Seca11g00069 705 SMART ultradead3 304 526 IPR014001 -
Seca11g00069 705 Coils Coil 197 223 - -
Seca11g00069 705 FunFam probable ATP-dependent RNA helicase DDX23 516 704 - -
Seca11g00069 705 Gene3D - 516 703 IPR027417 -
Seca11g00069 705 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 316 511 IPR014001 -
Seca11g00069 705 MobiDBLite consensus disorder prediction 673 705 - -
Seca11g00069 705 Coils Coil 89 133 - -
Seca11g00069 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 664 IPR027417 -
Seca11g00069 705 MobiDBLite consensus disorder prediction 25 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00069 Seca-Chr11 877291 879408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00069 283 665 Eukaryotic Initiation Factors Gene Family AT3G19760 31.510 1.00e-60 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00069 K12858 - gmx:100792810 1185.24