Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00057 ATGTATCAGCCGAAGAATTTTCCTAGTTCAAGTCTAGTTGGAAGTAACTCATTAGTTCATGATCAGCATATAGACTGTGGTGGCACTAGCAGCACAATGGATCCTGTCAATGGGGGGAACACTCTCACCAACAACCCTAGTCTCGCTTCCAAGCAGCGTTTACGCTGGACGAATGAACTACATGAACGCTTTGTTGATGCTGTGGCACAACTTGGCGGCCCAGATCGTGCCACACCTAAAGGTGTCCTGAGAGTTATGGGTGTACCGAGCTTAACAATATACCATGTCAAAAGCCATTTACAGAAATATCGACTAGCAAAATACTTACCTGACTCCTCATCAGATGAAGGGAAAAAAGTGGACAAGAAAGAAACAGGGGATATTGTTTCCAATCTAGATGGTTCATCTGGGATGCAAATTACCGAAGCACTTAAGCTTCAAATGGAGGTGCAGAAGAGACTGCATGAGCAATTAGAGGTGCAGAGACAGCTACAATTACGGATAGAAGCCCAGGGTAAATACTTGAAGAAGATTATTGAAGAGCAGCAGCGGCTCAGTGGGGTTCTTTCAGAAACACTTGACTCTGGGGTTGCAGCTCCTGTTCTAGGGGATATTCGCCAAGAACCAGATAACAAGACTGACCCAGCAACCCCTGCCCCAACTTCTGAGTGTCCCCTTCTAGAAAAAACTGCCAAAGAGCGTGCCCCAGCTAAGAGTGTTTCAATTGATAAATCTTTTTCATCTCATCATGAACCATTGACACCGGATTCTTGTTGCCATGTTGGTTCCCCTACTGACAGTCCTAAAGGAGAGAGGTCAACAAAGAAGCAACGGGGGAGCACGGAGGGAGCATATTCTATACCAGAAATGGTGCCAGAAATGGTGCTTCCGCATCAGATACTTGAGTCAAGTATATCATATCAGTATCAAAAAGCTGTTTTCATTACCCAAGAGCAATTTGATCCTTCATTGGGTATATCTGCAAGTGGTAATGAATTGGAGAAGGTTGGTAGCAGTAATCTGTGA 1026 0.4464 MYQPKNFPSSSLVGSNSLVHDQHIDCGGTSSTMDPVNGGNTLTNNPSLASKQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRVMGVPSLTIYHVKSHLQKYRLAKYLPDSSSDEGKKVDKKETGDIVSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSETLDSGVAAPVLGDIRQEPDNKTDPATPAPTSECPLLEKTAKERAPAKSVSIDKSFSSHHEPLTPDSCCHVGSPTDSPKGERSTKKQRGSTEGAYSIPEMVPEMVLPHQILESSISYQYQKAVFITQEQFDPSLGISASGNELEKVGSSNL. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00057 341 NCBIfam myb-like DNA-binding domain, SHAQKYF class 51 106 IPR006447 GO:0003677
Seca11g00057 341 Coils Coil 141 161 - -
Seca11g00057 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 108 IPR017930 -
Seca11g00057 341 MobiDBLite consensus disorder prediction 200 285 - -
Seca11g00057 341 FunFam Myb family transcription factor 50 108 - -
Seca11g00057 341 Pfam MYB-CC type transfactor, LHEQLE motif 138 184 IPR025756 -
Seca11g00057 341 Gene3D - 50 109 - -
Seca11g00057 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 41 336 IPR044848 GO:0003700
Seca11g00057 341 SUPERFAMILY Homeodomain-like 50 105 IPR009057 -
Seca11g00057 341 Pfam Myb-like DNA-binding domain 54 104 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00057 Seca-Chr11 759209 764033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00057 86 341 G2-like Transcription Factor Family AT2G01060 62.257 7.82e-95 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca11g00057 Myb_DNA-binding 3.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00057 - - tcc:18597377 490.345