Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00047 ATGAGTGAAAGAATATTAGTGATTCTGCTGCTTGTTTTCAAGTACTTGTTGATTGCGGAAGGAGAAACAGCTGATGGGGATTTGGTCACTCTTAAGTCTCTTATGGATACCTTGAAGAACACCCCTCCTAGTTGGGTGGGTTCAGATCCTTGTGATGATTGGGATGGAATTGAGTGCAAGAATTCACGTGTCACATCCATAACATTATCAACCACTGGTTTGGAAGGCCAGCTTTCTGGAGATATTGGATCACTATCTGAATTGGAGACTTTGGATCTATCTTACAACAAGGACTTGACAGGACCGCTTCCACAATCCATTGGAGAGTTGAAGAAGCTGTCAACCTTAATTCTTGTTGGTTGCAGCTTCAATGGTCCTATTCCAAACAACATAGGATATCTCCAGGAGCTCCGCTACTTATCTTTAAATTCCAATAGATTTAGTGGACAAATTCCGCATTCTATTGGTAATTTATCAAAGCTTTATTGGTTAGATTTAGCTGAAAATCAGCTTGAAGGGCCCATCCCAGTATCTAGTGACAGCCTCTCTGGTCTTGATAAGTTACTCAAAACCAAGCATTTTCATCTTGGGAAGAATAACCTCTCAGGCAGTATTCCTCCTCAACTTTTTAACTGGGAAATGTCTCTCATTCATTTGCTTTTAGAAAGCAATCAACTCACTGGCAATATTCCATCTACACTTGGGGAAGTTCAGAGTCTGGAGGTGGTGCGATTGGATAGTAATTCATTAAGTGGACCTGTACCTCCAAACATCAACAATCTTACAAATGTTCAAGATCTGTACTTGTCCAATAATAAACTTTCAGGCTCTCTGCCAAACCTTGCTGGAATGGATGTCCTCAGCAACCTGGACATGAGCAACAACAGTTTTAAGCCATTGGATTTTCCACCATGGTTTTCTACTCTCAAGTCTTTAACAACATTAAATCTTACAGAATCTGAACACACATGCAACTACTTATACATAATATATAATATTTATATTGTAACATGTGATGATAGGGTGCTAAAACACAACAAGATAAATGGAACCTTGGATGTAGGCTCCTCCTACAGCAACCAGCTGAGACTTATTGATTTAGAGACCAATTCAATTGACGAATTTAAGCAAAAAGATGGAGTGTCAAATATCAAGATAATACTTAAAGATAACCCAATTTGTGATGAAATTGGAGCAGTGGGGAACTACTGCTCCAGTGTTCAACGTGAAGTCTCATACACAACACCAACAAATAATTGTGAAGTTGGTACCTGCAGTGCAGAACAGGTTCCTAGCCCTGATTGTGCATGTGCATATCCTTATACAGGAACCTTAACTTTCAGATTACCCTCTTTTTCAAACCTTGATAACAAAACTCACTACCAAATGCTTGAGGAGGGTCTTATGCATTCTTTTAAGTCTCATTATCTACCTGTGGATTCAGTTATGTTGAGCCATCCAACTAAGGATTCAAATCAATATCTTAAATTGAGCTTGCAAGTTTTCCCATCAGGACAAGATCATTTCAACCGATCAGGGGCTTTTAGCATTGGTTTTATGCTGAGCAACCAGACTTTTAAGCCACCTAAAGATTTTGGACCATATTATTTTATTGCAGATAAATATGAACACTTTGAAAATTCTGGTAAATTTCTTTACCATACAAATGGAAGTAAATCTTCAAACTTTGGAATCATAATTGGAGCAGCAGGTGGTGCTTTAGTCTTGCTAGTGTTATTACTTTTAGCAGGTGTTTATGCTTTCCGCCAAAAGAAAAGGGCTGAGAAAGCAATTGAACAAAGCAATCCTTTTAGAGGCTGGGACATATCTGAGAGCAACAGTGACATACCTCAGTTAAAAGAAGCAAGGCGGTTTTCTTTTGAAGAGCTTAAAAAATACACCAAAAATTTTTCTCAAGCCAATGATATTGGATCTGGGGGTTTTGGAAAGGTTTATAAAGGAACCCTTCCGAATGGGCAACTGGTAGCAATAAAACGAGCGCAAAAAGAATCAATGCAGGGAAAGCTTGAGTTTAAAGCTGAGATTGAACTCCTATCAAGGGTGCACCATAAAAATCTTGTTAGCCTTCTTGGATTCTGCTTTGAGCAAGGAGAACAAATGCTGGTTTATGAGTATGTTCCAAATGGAACTTTAAAGGATACTCTCTTAGGGAAATCAGGAATTAGATTGGACTGGATTAGAAGGCTAAAAGTAGCCCTTGGTGCTGCCAGGGGTTTGGCTTATCTTCATGAACATGCCAATCCTCCTATCATCCATAGGGACATCAAATCAAACAATATTTTGCTGGATGAGAGGTTAAATGCCAAAGTTGCTGATTTTGGTCTCTCCAAGTCTATGGTTGATTGTGAAAAAGATCATGTCACCACTCAAGTTAAAGGAACAATGGGATACATGGATCCAGAGTATTATATGTCTCAACAATTGACTGAGAAGAGTGATGTTTATAGCTTTGGAGTGCTGTTGTTGGAGCTGATATCAGGTAGAAGGCCATTAGAACGAGGGAGGTATATTGTGAAAGAGGTTAAGAGTGCATTTGATAAGACAAAAAGTTTGTATGGTCTTGATGAAATTATTGATCCAGCCATTGGTTCAGCTTCGACACTAAACGGTTTTGAGAAGTTATTAGATGTTGCCATGAAATGTGTTGAAGAGACAGGTGTTGAGAGGCCTAAAATGAGTGACGTGGTGAGAGAAATTGAAAACATATTGAAGTCAAACCCTGGGGCGAGGGATGAAGAATCACCATCAATTTCTTCCAGTTATGAAGAGGTAAGCCGAGGGAGTTCCTCCTGCCATCCTTATAGTAACGAGCTATTTTGA 2841 0.3907 MSERILVILLLVFKYLLIAEGETADGDLVTLKSLMDTLKNTPPSWVGSDPCDDWDGIECKNSRVTSITLSTTGLEGQLSGDIGSLSELETLDLSYNKDLTGPLPQSIGELKKLSTLILVGCSFNGPIPNNIGYLQELRYLSLNSNRFSGQIPHSIGNLSKLYWLDLAENQLEGPIPVSSDSLSGLDKLLKTKHFHLGKNNLSGSIPPQLFNWEMSLIHLLLESNQLTGNIPSTLGEVQSLEVVRLDSNSLSGPVPPNINNLTNVQDLYLSNNKLSGSLPNLAGMDVLSNLDMSNNSFKPLDFPPWFSTLKSLTTLNLTESEHTCNYLYIIYNIYIVTCDDRVLKHNKINGTLDVGSSYSNQLRLIDLETNSIDEFKQKDGVSNIKIILKDNPICDEIGAVGNYCSSVQREVSYTTPTNNCEVGTCSAEQVPSPDCACAYPYTGTLTFRLPSFSNLDNKTHYQMLEEGLMHSFKSHYLPVDSVMLSHPTKDSNQYLKLSLQVFPSGQDHFNRSGAFSIGFMLSNQTFKPPKDFGPYYFIADKYEHFENSGKFLYHTNGSKSSNFGIIIGAAGGALVLLVLLLLAGVYAFRQKKRAEKAIEQSNPFRGWDISESNSDIPQLKEARRFSFEELKKYTKNFSQANDIGSGGFGKVYKGTLPNGQLVAIKRAQKESMQGKLEFKAEIELLSRVHHKNLVSLLGFCFEQGEQMLVYEYVPNGTLKDTLLGKSGIRLDWIRRLKVALGAARGLAYLHEHANPPIIHRDIKSNNILLDERLNAKVADFGLSKSMVDCEKDHVTTQVKGTMGYMDPEYYMSQQLTEKSDVYSFGVLLLELISGRRPLERGRYIVKEVKSAFDKTKSLYGLDEIIDPAIGSASTLNGFEKLLDVAMKCVEETGVERPKMSDVVREIENILKSNPGARDEESPSISSSYEEVSRGSSSCHPYSNELF. 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00047 946 ProSiteProfiles Protein kinase domain profile. 637 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00047 946 Gene3D Ribonuclease Inhibitor 282 400 IPR032675 -
Seca11g00047 946 PANTHER RECEPTOR-LIKE PROTEIN 55 32 909 - -
Seca11g00047 946 ProSitePatterns Serine/Threonine protein kinases active-site signature. 757 769 IPR008271 GO:0004672|GO:0006468
Seca11g00047 946 Gene3D Transferase(Phosphotransferase) domain 1 713 931 - -
Seca11g00047 946 ProSiteProfiles Leucine-rich repeat profile. 263 285 IPR001611 GO:0005515
Seca11g00047 946 MobiDBLite consensus disorder prediction 918 946 - -
Seca11g00047 946 ProSitePatterns Protein kinases ATP-binding region signature. 643 665 IPR017441 GO:0005524
Seca11g00047 946 FunFam Leucine-rich repeat family protein 26 180 - -
Seca11g00047 946 SMART serkin_6 637 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g00047 946 FunFam Leucine-rich repeat protein kinase family protein 605 712 - -
Seca11g00047 946 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 713 922 - -
Seca11g00047 946 Pfam Protein tyrosine and serine/threonine kinase 640 905 IPR001245 GO:0004672|GO:0006468
Seca11g00047 946 SUPERFAMILY L domain-like 31 325 - -
Seca11g00047 946 SUPERFAMILY Protein kinase-like (PK-like) 623 933 IPR011009 -
Seca11g00047 946 CDD STKc_IRAK 643 909 - -
Seca11g00047 946 FunFam Leucine-rich repeat protein kinase family protein 181 280 - -
Seca11g00047 946 Gene3D Ribonuclease Inhibitor 25 180 IPR032675 -
Seca11g00047 946 Gene3D Ribonuclease Inhibitor 181 281 IPR032675 -
Seca11g00047 946 Gene3D Phosphorylase Kinase; domain 1 607 712 - -
Seca11g00047 946 MobiDBLite consensus disorder prediction 912 946 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00047 Seca-Chr11 685943 692046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00047 8 946 Receptor kinase-like Gene Family AT5G49760 54.237 0.0 922
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Seca11g00047 PK_Tyr_Ser-Thr 3.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00047 - - gmx:100811702 1415.21